PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g12470.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 145aa MW: 16307 Da PI: 7.5138

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g12470.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	40.7	6.1e-13	111	145	2	40
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtae 40 +++G+r+++ +g+W+AeIrdp + +r++lg+f tae Zjn_sc00002.1.g12470.1.sm.mkhc 111 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTAE 145 69*****.******72....35********76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.6E-18	110	145	IPR001471	AP2/ERF domain
Pfam	PF00847	2.8E-7	111	145	IPR001471	AP2/ERF domain
CDD	cd00018	4.16E-15	111	145	No hit	No description
SMART	SM00380	6.2E-8	111	145	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	16.542	111	145	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.37E-11	111	145	IPR016177	DNA-binding domain
PRINTS	PR00367	2.5E-9	112	123	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-9	134	145	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MCGGAILTEL IPPPRRATSR PVTAGSLWPA SCKKGGSGRN KKRGRVDDAE TDDFEAAFEE 60 FDDDFDEMEE DEDDDYGYDG SRPFVFASKS AFPAAHDGRA ARSQKKRGRR HFRGIRQRPW 120 GKWAAEIRDP HKGTRVWLGT FNTAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-13	110	145	4	40	ATERF1
3gcc_A	2e-13	110	145	4	40	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	109	QKKRGRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269\|PubMed:22020282, ECO:0000269\|PubMed:22530619}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269\|PubMed:22020282}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT034434	5e-43	BT034434.1 Zea mays full-length cDNA clone ZM_BFc0170J03 mRNA, complete cds.
GenBank	BT039300	5e-43	BT039300.1 Zea mays full-length cDNA clone ZM_BFc0004M21 mRNA, complete cds.
GenBank	BT063174	5e-43	BT063174.1 Zea mays full-length cDNA clone ZM_BFc0035E09 mRNA, complete cds.
GenBank	EU941438	5e-43	EU941438.1 Zea mays clone 1452173 mRNA sequence.
GenBank	EU970244	5e-43	EU970244.1 Zea mays clone 342610 root abundant factor mRNA, complete cds.
GenBank	KJ726938	5e-43	KJ726938.1 Zea mays clone pUT3484 AP2-EREBP transcription factor (EREB180) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791485.1	1e-54	ethylene-responsive transcription factor 1-like
Refseq	XP_025791486.1	1e-54	ethylene-responsive transcription factor 1-like
Swissprot	Q9SSA8	1e-25	RA212_ARATH; Ethylene-responsive transcription factor RAP2-12
TrEMBL	A0A2S3ITL4	3e-53	A0A2S3ITL4_9POAL; Uncharacterized protein
STRING	Pavir.Ib00526.1.p	2e-57	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7987	30	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53910.3	8e-15	related to AP2 12

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kosmacz M, et al. The stability and nuclear localization of the transcription factor RAP2.12 are dynamically regulated by oxygen concentration. Plant Cell Environ., 2015. 38(6): p. 1094-103 [PMID:25438831] Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana. Plant Sci., 2015. 236: p. 37-43 [PMID:26025519] Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Gonzali S, et al. Universal stress protein HRU1 mediates ROS homeostasis under anoxia. Nat Plants, 2015. 1: p. 15151 [PMID:27251529] Paul MV, et al. Oxygen Sensing via the Ethylene Response Transcription Factor RAP2.12 Affects Plant Metabolism and Performance under Both Normoxia and Hypoxia. Plant Physiol., 2016. 172(1): p. 141-53 [PMID:27372243] Shahzad Z, et al. A Potassium-Dependent Oxygen Sensing Pathway Regulates Plant Root Hydraulics. Cell, 2016. 167(1): p. 87-98.e14 [PMID:27641502] Yao Y, et al. ETHYLENE RESPONSE FACTOR 74 (ERF74) plays an essential role in controlling a respiratory burst oxidase homolog D (RbohD)-dependent mechanism in response to different stresses in Arabidopsis. New Phytol., 2017. 213(4): p. 1667-1681 [PMID:28164334] Giuntoli B,Licausi F,van Veen H,Perata P Functional Balancing of the Hypoxia Regulators RAP2.12 and HRA1 Takes Place in vivo in Arabidopsis thaliana Plants. Front Plant Sci, 2017. 8: p. 591 [PMID:28487707] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474] Eysholdt-Derzsó E,Sauter M Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling. Plant Physiol., 2017. 175(1): p. 412-423 [PMID:28698356] Giuntoli B, et al. Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana. Plant Cell Environ., 2017. 40(10): p. 2333-2346 [PMID:28741696]