PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g13560.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TALE

Protein Properties

Length: 560aa MW: 61050.5 Da PI: 7.0552

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g13560.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.3	1.3e-08	345	382	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gL+ qV++WF N R + Zjn_sc00002.1.g13560.1.am.mk 345 FEHflHPYPKDSEKLMLARQTGLSSGQVSNWFINARVR 382 554459******************************88 PP
2	BELL	107.8	6.9e-35	207	278	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq+k L+ ll++Vd++Y++y++q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+dai q+ Zjn_sc00002.1.g13560.1.am.mk 207 ERQDLQNKVWALVALLDQVDRKYRHYHHQMQIVMSSFDAVAGAGAARPYTALALQTISRHFRSLRDAIGAQV 278 799*****************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.1E-46	140	276	IPR006563	POX domain
Pfam	PF07526	5.0E-46	147	274	IPR006563	POX domain
PROSITE profile	PS50071	11.904	323	386	IPR001356	Homeobox domain
CDD	cd00086	1.75E-11	326	387	No hit	No description
SMART	SM00389	2.2E-8	326	390	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-16	327	393	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-27	329	392	IPR009057	Homeodomain-like
Pfam	PF05920	1.1E-16	343	382	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence Send to blast
MCRRTAAFFS TYTNHTDLTV GGNMSYHHYN AYSDSATGGL IPIPATIAQR VRGYAAHGED 60 GRDEPAPFVS TREGQASGAE MGLQTQLLMA NATSAAQSQG LSHSLGSQGV PASLYQQYRP 120 AGMAAASLLS PNLAAAASRN AQSNIYIENS KYLKAARELL DEVVSVRHAI KRKGDKNQSK 180 DSGECTDAEK AGGEHEGNST TELTASERQD LQNKVWALVA LLDQVDRKYR HYHHQMQIVM 240 SSFDAVAGAG AARPYTALAL QTISRHFRSL RDAIGAQVQS LRRSLGEKDT AAQTGGLSRL 300 RYIDQHLRQQ RAMQQFGMMQ QPQHAWRPQR GLPESAVSVL RAWLFEHFLH PYPKDSEKLM 360 LARQTGLSSG QVSNWFINAR VRLWKPMIEE MYKEEFGAEM DSHSHSENAG NKGKDEAMSS 420 EDHDEFQSPS SAAKHGAGHH TDTFKSEATG TYANSLNLNH QSAVGSGNGS RLLQDALAHH 480 RHGGDARFVS YGYMASHVGG YDGGGSVSLT LGLQHCDDAG AAPAEQPGLL YGNVGDFEFV 540 NGDEDRQRFG SSKLLHDFVT

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence Send to blast

MCRRTAAFFS TYTNHTDLTV GGNMSYHHYN AYSDSATGGL IPIPATIAQR VRGYAAHGED  60
GRDEPAPFVS TREGQASGAE MGLQTQLLMA NATSAAQSQG LSHSLGSQGV PASLYQQYRP  120
AGMAAASLLS PNLAAAASRN AQSNIYIENS KYLKAARELL DEVVSVRHAI KRKGDKNQSK  180
DSGECTDAEK AGGEHEGNST TELTASERQD LQNKVWALVA LLDQVDRKYR HYHHQMQIVM  240
SSFDAVAGAG AARPYTALAL QTISRHFRSL RDAIGAQVQS LRRSLGEKDT AAQTGGLSRL  300
RYIDQHLRQQ RAMQQFGMMQ QPQHAWRPQR GLPESAVSVL RAWLFEHFLH PYPKDSEKLM  360
LARQTGLSSG QVSNWFINAR VRLWKPMIEE MYKEEFGAEM DSHSHSENAG NKGKDEAMSS  420
EDHDEFQSPS SAAKHGAGHH TDTFKSEATG TYANSLNLNH QSAVGSGNGS RLLQDALAHH  480
RHGGDARFVS YGYMASHVGG YDGGGSVSLT LGLQHCDDAG AAPAEQPGLL YGNVGDFEFV  540
NGDEDRQRFG SSKLLHDFVT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	2e-17	332	389	1	58	Homeobox protein Meis1
4xrs_B	2e-17	332	389	1	58	Homeobox protein Meis1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728497	0.0	KJ728497.1 Zea mays clone pUT6802 HB transcription factor (HB64) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797172.1	0.0	BEL1-like homeodomain protein 7
TrEMBL	A0A1E5W1C9	0.0	A0A1E5W1C9_9POAL; BEL1-like homeodomain protein 7
STRING	Si034960m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP901	38	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-122	BEL1-like homeodomain 7