PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g13730.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 382aa    MW: 43633.9 Da    PI: 6.1578
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g13730.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.41.9e-32441342101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+++++ d++++ ++sw + gnsf+v+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k+++++         weF+
  Zjn_sc00002.1.g13730.1.am.mk  44 FLTKTFDLVADPATDGVVSWGRAGNSFIVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDTDR---------WEFA 115
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   +k F +g+++ll+ ikr++
  Zjn_sc00002.1.g13730.1.am.mk 116 NKGFLRGQRHLLRMIKRRR 134
                                   *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3640133IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.17E-3440133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.1E-5640133IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.1E-3044133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-184467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-1895107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDPEMPGLAT VKEEWPPEEE EEVEDAVGAP RPMEGLHKVG PPPFLTKTFD LVADPATDGV  60
VSWGRAGNSF IVWDPHVFAA VLLPRFFKHN NFSSFVRQLN TYGFRKIDTD RWEFANKGFL  120
RGQRHLLRMI KRRRPPSYLA ASHQQQQQAL GSYLEVGHFG LDEEIDRLQR DKNTLLAEVV  180
KLRQEQQSTK ADVQAMEERL QHAETKQVQM MGFLARALQN PDFFQQLLAQ HQDSKRKELE  240
DAFSKKRRRP IDVVPFAASS CQTTTNRSEE QYSAFYFGPR GAREFEELSE PGSSELENRA  300
LNIHGLGKRK QDVQPQAASD RNNQVGETAE LTDDFWEELL SEGLRGEGEL PVPETERRSR  360
PPGRYVHALA QKLSHLTDST VK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-254213318120Heat shock factor protein 1
5hdg_A3e-25421338110Heat shock factor protein 1
5hdn_A3e-25421338110Heat shock factor protein 1
5hdn_B3e-25421338110Heat shock factor protein 1
5hdn_C3e-25421338110Heat shock factor protein 1
5hdn_D3e-25421338110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234248KRKELEDAFSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1057292e-75AC105729.2 Oryza sativa Japonica Group chromosome 3 clone OJ1607A12, complete sequence.
GenBankAK0668442e-75AK066844.1 Oryza sativa Japonica Group cDNA clone:J013088J01, full insert sequence.
GenBankAP0149592e-75AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649439.21e-174PREDICTED: heat stress transcription factor A-2d
SwissprotQ8H7Y61e-172HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A1E5WLF60.0A0A1E5WLF6_9POAL; Heat stress transcription factor A-2d
STRINGSi038907m1e-170(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-96heat shock transcription factor A6B