PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g16520.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 381aa    MW: 42382.7 Da    PI: 10.5396
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g16520.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.32.4e-31138242199
                                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                   f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++g
  Zjn_sc00002.1.g16520.1.am.mk 138 FDKVVTPSDVGKLNRLVIPKQHAEKYfplgSAANEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVITKGWSRFVKEKRLDAG 218
                                   89***************************955556888******************************************* PP

                                   -EEEEEE-.SS.SEE..EEEEE-S CS
                            B3  78 DfvvFkld.gr.sefelvvkvfrk 99 
                                   D+v F +  g+  +++l++ ++r+
  Zjn_sc00002.1.g16520.1.am.mk 219 DTVSFGRGvGEnARGRLFIDWRRR 242
                                   ******6557779999**999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-40132248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.98E-29135246IPR015300DNA-binding pseudobarrel domain
CDDcd100173.47E-26136223No hitNo description
SMARTSM010191.2E-21138243IPR003340B3 DNA binding domain
PROSITE profilePS5086314.522138243IPR003340B3 DNA binding domain
PfamPF023623.5E-28138242IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MLIYGHDQSH RSTRISSRLL RRRQEETLAS QVASRLGEFE IKRPESAGSS TSRGYARGDD  60
LARGIGEAQQ LLIALFYSSF QRIHYWRERA TKEASERPTN LCGLAPSLLM TTELTAGPIR  120
SGGGGDDAAV AVEKEHMFDK VVTPSDVGKL NRLVIPKQHA EKYFPLGSAA NEKGLLLSFE  180
DRTGKPWRFR YSYWNSSQSY VITKGWSRFV KEKRLDAGDT VSFGRGVGEN ARGRLFIDWR  240
RRPEPPAPYY HHRLAIPSSL PFAPWARAHY PAGIGGAGRT VLHLPPSPSS LYDSHRRRHD  300
VYTPSTRQVL LYRPHQQQQA TVVQESGLVR TPTSTPGQAE PPSVESSGSK RLRLFGVNLD  360
CAAGSEEGKG KGRRSAPPQP P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-611332443115B3 domain-containing transcription factor NGA1
5os9_B1e-611332443115B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666011e-132AK366601.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044K15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798126.11e-125B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR91e-101Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A1E5W4M91e-129A0A1E5W4M9_9POAL; B3 domain-containing protein
STRINGPavir.Ia04549.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.17e-67B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]