PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g16790.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 105aa    MW: 11424.9 Da    PI: 10.1441
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g16790.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.9e-183383156
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  + y+G+r++   g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a+++l+g+
  Zjn_sc00002.1.g16790.1.am.mk 33 PVYRGIRYRG--GKWVSEIREPRK---SNRIWLGTYPTPEMAAAAYDVAALALRGA 83
                                  68*****975..*********954...49************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-123382IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-193490IPR016177DNA-binding domain
PROSITE profilePS5103220.4813490IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-273490IPR001471AP2/ERF domain
SMARTSM003807.2E-253496IPR001471AP2/ERF domain
PRINTSPR003679.9E-73546IPR001471AP2/ERF domain
CDDcd000181.59E-133590No hitNo description
PRINTSPR003679.9E-77292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MEPDPEQEVV QDAAGTPFPG SVVRRARADT RHPVYRGIRY RGGKWVSEIR EPRKSNRIWL  60
GTYPTPEMAA AAYDVAALAL RGADAALNFP GAARRGCQYG GPRAG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2365279e-75AC236527.1 Oryza minuta clone OM__Ba0059E04, complete sequence.
GenBankAC2365429e-75AC236542.1 Oryza minuta clone OM__Ba0185B12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685545.14e-35ethylene-responsive transcription factor ERF024
SwissprotQ9LYD32e-28DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1E5WJH04e-34A0A1E5WJH0_9POAL; Uncharacterized protein
TrEMBLK4AK414e-34K4AK41_SETIT; Uncharacterized protein
STRINGSi039264m6e-35(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-20ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]