PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g05800.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 233aa    MW: 24330.8 Da    PI: 7.0054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g05800.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-182675255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Zjn_sc00003.1.g05800.1.sm.mk 26 QYKGVRMRS-WGSWVSEIRAP---NQKRRIWLGSYATAEAAARAYDAALLCLKG 75
                                  69****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-302585IPR001471AP2/ERF domain
PROSITE profilePS5103222.2862683IPR001471AP2/ERF domain
PfamPF008472.2E-112675IPR001471AP2/ERF domain
CDDcd000186.81E-162685No hitNo description
SuperFamilySSF541718.5E-202684IPR016177DNA-binding domain
SMARTSM003801.0E-342689IPR001471AP2/ERF domain
PRINTSPR003671.8E-82738IPR001471AP2/ERF domain
PRINTSPR003671.8E-84965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVKSPSNPAA TAFTEGACRG KAAARQYKGV RMRSWGSWVS EIRAPNQKRR IWLGSYATAE  60
AAARAYDAAL LCLKGADAVL NFPSSSPSRN VAGGHRGHSD LAAGSVSPRS IQSAAAAAAA  120
AFDTCTSVDA SGDDRCSSSD GASATATTSA SLSPTPRRDD RHGRHGQEHT TPSSSAAAIT  180
GSSAQGEEMW TDLLDVLASP KCVDLMAARA APFSSTWEEP EDDGEMMRLW SFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1326831472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276608e-74KJ727660.1 Zea mays clone pUT5587 AP2-EREBP transcription factor (EREB173) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795709.11e-67ethylene-responsive transcription factor ERF014-like
TrEMBLA0A3L6TSU08e-67A0A3L6TSU0_PANMI; Uncharacterized protein
STRINGPavir.Ia03856.1.p2e-66(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-25ERF family protein