PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g06800.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bZIP
Protein Properties Length: 232aa    MW: 25726.5 Da    PI: 6.9621
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g06800.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_157.23.7e-18148203156
                                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                                     e+elk+++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l++++
  Zjn_sc00003.1.g06800.1.am.mkhc 148 ERELKKQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKC 203
                                     89***************************************************998 PP
2bZIP_121.45.3e-071932232555
                                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1  25 kaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                                     k+e+++L+ek++ L++eN++L ++l+el++e
  Zjn_sc00003.1.g06800.1.am.mkhc 193 KEELKQLQEKCDILTSENTSLHEKLKELEDE 223
                                     799**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.0E-14473IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1705.5E-15145206No hitNo description
SMARTSM003383.3E-19148212IPR004827Basic-leucine zipper domain
PfamPF001708.0E-17148204IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.335150213IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.89E-10151207No hitNo description
CDDcd147025.38E-22153204No hitNo description
PROSITE patternPS000360155170IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVSEQSTSTN PPTVYPDWSQ FQAYYNAAGT APMTPPAFFH SPVAPNPQGH PYMWGPQGSH  60
PYSPYPVQSP KGTVQTPGSR VKDGSERGQS NDAGNKGTGS AVEPLQPSSG PVVLNPMMPF  120
WPVPPPMAGP ATAVNMSGDY WGAPTSDERE LKKQKRKQSN RESARRSRLR KQAEWEEVAN  180
RADLLKQENS SLKEELKQLQ EKCDILTSEN TSLHEKLKEL EDEKSNGNWY KD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164170RRSRLRK
2164171RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0665631e-81AK066563.1 Oryza sativa Japonica Group cDNA clone:J013071G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795520.17e-85bZIP transcription factor 16-like isoform X1
RefseqXP_025795521.17e-85bZIP transcription factor 16-like isoform X1
RefseqXP_025795522.13e-85bZIP transcription factor 16-like isoform X2
SwissprotQ501B21e-28BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A059Q3D71e-120A0A059Q3D7_9POAL; Transcription factor
STRINGPavir.Ia03945.1.p9e-84(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115063238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.21e-25G-box binding factor 1
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]