PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g07410.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 259aa    MW: 27905.6 Da    PI: 9.4713
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g07410.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-1799151254
                                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     rk+ ++tkeq   Le  F+++++++ ++++ LAk+l+L  rqV vWFqNrRa 
  Zjn_sc00003.1.g07410.1.sm.mkhc  99 RKKLRLTKEQSALLEGRFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRAS 151
                                     788899*********************************************96 PP
2HD-ZIP_I/II114.56.4e-3799192191
                     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRA....RtktkqlEkdyeaLkraydalke 75 
                                     +kk+rl+keq++lLE  F+e+++L+p++K++la++L+l+prqv+vWFqnrRA    Rtk+kq+E+d+e+Lkr++++l+e
  Zjn_sc00003.1.g07410.1.sm.mkhc  99 RKKLRLTKEQSALLEGRFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRAsrarRTKLKQTEVDCEFLKRCCETLTE 177
                                     69*************************************************988889********************** PP

                     HD-ZIP_I/II  76 enerLekeveeLreel 91 
                                     en+rL++e +eLr +l
  Zjn_sc00003.1.g07410.1.sm.mkhc 178 ENRRLQRELQELR-AL 192
                                     ************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-1786149IPR009057Homeodomain-like
SuperFamilySSF466899.61E-1792151IPR009057Homeodomain-like
PROSITE profilePS5007116.29395155IPR001356Homeobox domain
SMARTSM003895.2E-1497159IPR001356Homeobox domain
PfamPF000461.6E-1499151IPR001356Homeobox domain
CDDcd000869.90E-1499157No hitNo description
CDDcd146860.00406146191No hitNo description
PfamPF021832.1E-10159193IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-23159202IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAQEDVHLSD AGLALGLSLG GGGASSDAAR RSPTGSTRQR RASPPCALEP SLTLSLPDEA  60
TPATALSVKR ELAEEAEAER ASSTARGAGA EDDDDGTTRK KLRLTKEQSA LLEGRFKEHS  120
TLNPKQKAAL AKQLNLRPRQ VEVWFQNRRA SRARRTKLKQ TEVDCEFLKR CCETLTEENR  180
RLQRELQELR ALKLAAPAGA PPSPAVPFYM QLPAATLSVC PSCDRLGGPA AAKAADADRP  240
MGRTATHHLF NPFARSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197103TRKKLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0977881e-103FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797738.11e-106homeobox-leucine zipper protein HOX19-like isoform X1
SwissprotA2XE761e-97HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-97HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A3L6TSB81e-105A0A3L6TSB8_PANMI; Homeobox-leucine zipper protein HOX19 isoform X2
STRINGPavir.J25440.1.p1e-96(Panicum virgatum)
STRINGOPUNC03G09020.11e-96(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-44HD-ZIP family protein