PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g07760.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 388aa    MW: 42424.7 Da    PI: 4.9379
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g07760.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.3e-34581492102
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+y++++d++++++isws  g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv+ ++         we
  Zjn_sc00003.1.g07760.1.am.mkhc  58 FLTKVYDMVSDPATDSIISWSPGGGSFVIWDSHAFERDLLPRHFKHNHFTSFIRQLNTYGFHKVDPDR---------WE 127
                                     9****************************************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkks 102
                                     ++++ F k++k+ll++ikrkk+
  Zjn_sc00003.1.g07760.1.am.mkhc 128 WANEGFVKDQKHLLKTIKRKKK 149
                                     ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-5654147IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.27E-3454147IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-3755147IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-185881IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.5E-3158147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-1896108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-18109121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGSKKKSPQP SAAAEGTPAA AGEAPGDVGA LPAGKGPAPA PAPAPAVVVP KPPDVAPFLT  60
KVYDMVSDPA TDSIISWSPG GGSFVIWDSH AFERDLLPRH FKHNHFTSFI RQLNTYGFHK  120
VDPDRWEWAN EGFVKDQKHL LKTIKRKKKI SQETPDPPQA PVKPAPGTET IEIGNYGGLE  180
KEVEKLKRDK TLLMQQLVDL RHYQQSSNLE LQNLIQRLHV MEQNQQQMMA LLAIVVQNPD  240
FLNQLVQQQR RSNLWNDDGS KKRRFIALEQ GPAAEQETSG ASAPIIQYRP PVPAIANEVM  300
PVDGAFCATP GGPVSSPALA TPMDAEMTPN NADTLGSTSE HFTGSPGLCD WEAVDMDALF  360
NDLDSMDTSV EHDGQMEDPL SVDDYQQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-245214714120Heat shock factor protein 1
5d5u_B1e-245214723129Heat shock factor protein 1
5d5v_B1e-245214723129Heat shock factor protein 1
5d5v_D1e-245214723129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468244.10.0heat stress transcription factor A-9
RefseqXP_021306702.10.0heat stress transcription factor A-9
SwissprotQ10PR41e-168HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLB4F9K60.0B4F9K6_MAIZE; Uncharacterized protein
STRINGSb01g042370.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.15e-69heat shock factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]