PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g08150.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 306aa    MW: 33601.4 Da    PI: 11.0056
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g08150.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.4e-28191241151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krienk+ rqvtf+kRrng+lKKA+ELS LCdaeva+iifs +g+l+e+ss
  Zjn_sc00003.1.g08150.1.am.mk 191 KRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSS 241
                                   79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-32183242IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-28185205IPR002100Transcription factor, MADS-box
CDDcd002651.19E-35186249No hitNo description
PROSITE profilePS5006629.072186243IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-26186247IPR002100Transcription factor, MADS-box
PfamPF003192.1E-24192239IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-28205220IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-28220241IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAFASLSLAR ASVVFTPPSL TSELYDGIHP AALAHAIHSM PQTPSCSMQE PKSAAASRIC  60
DRPTASRRVG PALSVDPSSS RSQLDTRRLV AETSSPPRTA YGHRPLLLLD LSPRRTRARP  120
ASATRQRGFG RPQRGVRVGP VDLGGHQLIE PASSTRARAR GPTIRGEKLR NSEGGRGQRG  180
RATLIGEVEL KRIENKISRQ VTFAKRRNGL LKKAYELSLL CDAEVALIIF SGRGRLFEFS  240
SSSCLLVLEI RRCDLIFLEP RVEELSTADL TALTRTFHQQ AYMDQLNNQD MAVAEHPNEH  300
GPPGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A3e-15187242459MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B3e-15187242459MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C3e-15187242459MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D3e-15187242459MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3mu6_A2e-15187242459Myocyte-specific enhancer factor 2A
3mu6_B2e-15187242459Myocyte-specific enhancer factor 2A
3mu6_C2e-15187242459Myocyte-specific enhancer factor 2A
3mu6_D2e-15187242459Myocyte-specific enhancer factor 2A
6bz1_A3e-15187279594MEF2 CHIMERA
6bz1_B3e-15187279594MEF2 CHIMERA
6bz1_C3e-15187279594MEF2 CHIMERA
6bz1_D3e-15187279594MEF2 CHIMERA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0027101e-70KJ002710.1 Phyllostachys edulis MADS-box protein 1 mRNA, complete cds.
GenBankKJ7281881e-70KJ728188.1 Zea mays clone pUT6461 MADS transcription factor (MADS8) mRNA, partial cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.35e-30MIKC_MADS family protein