PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g09190.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 235aa    MW: 25924 Da    PI: 5.5106
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g09190.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.6e-1861114356
                                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     k++++++eq + Le  F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  Zjn_sc00003.1.g09190.1.sm.mkhc  61 KKRRLSDEQARFLEMRFREERKLETPRKVKLAAELGLDAKQVAVWFQNRRARHK 114
                                     56689***********************************************99 PP
2HD-ZIP_I/II109.72e-3561152293
                     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 
                                     kkrrls+eq+++LE+ F+ee+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da + +n++L
  Zjn_sc00003.1.g09190.1.sm.mkhc  61 KKRRLSDEQARFLEMRFREERKLETPRKVKLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRAAHDAAVLQNCHL 139
                                     9****************************************************************************** PP

                     HD-ZIP_I/II  81 ekeveeLreelke 93 
                                     e+e  +L+++l+e
  Zjn_sc00003.1.g09190.1.sm.mkhc 140 ETELLKLKDRLAE 152
                                     ********99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.71456116IPR001356Homeobox domain
SMARTSM003892.6E-1559120IPR001356Homeobox domain
SuperFamilySSF466895.31E-1660122IPR009057Homeodomain-like
CDDcd000867.51E-1461116No hitNo description
PfamPF000461.3E-1561114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-1661114IPR009057Homeodomain-like
PRINTSPR000318.6E-68796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000318.6E-696112IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGGEAVERLL FPSFAFVDPA ESFAEAVDTS GSGGEQKKAR QRRRQKPKPV ADGEPGDEQA  60
KKRRLSDEQA RFLEMRFREE RKLETPRKVK LAAELGLDAK QVAVWFQNRR ARHKSKLMEE  120
EFAKLRAAHD AAVLQNCHLE TELLKLKDRL AEAEEEKDKL IAAAAAATAG GGAGSSSPSS  180
SSFSTVTCNP AALVGQFRVE DEAADFSYMG QYAYNEYMMD FAAGYFGGVA DDQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14163RRRQKPKPVADGEPGDEQAKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985327.13e-99homeobox-leucine zipper protein HOX12
SwissprotQ10QF21e-80HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBLK4AEE87e-98K4AEE8_SETIT; Uncharacterized protein
STRINGSi037255m1e-98(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-35homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S,Fang J,Xu F,Wang W,Chu C
    Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
    Plant Cell, 2016. 28(3): p. 680-95
    [PMID:26977084]