PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g10420.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 328aa    MW: 35062.5 Da    PI: 4.4473
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g10420.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-1895144255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+W+AeIrdp+    +  r++lg++ +ae Aa+a++aa++ ++g
  Zjn_sc00003.1.g10420.1.sm.mk  95 QYRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTYSSAEAAARAYDAAARDIRG 144
                                   69*******.**********75....44**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.82E-1894154No hitNo description
SMARTSM003802.4E-3795158IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-2295153IPR016177DNA-binding domain
PfamPF008475.3E-1295144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3195153IPR001471AP2/ERF domain
PROSITE profilePS5103224.69895152IPR001471AP2/ERF domain
PRINTSPR003672.5E-1096107IPR001471AP2/ERF domain
PRINTSPR003672.5E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPARRVK LGHLWPAAAT TSNDKRQRRK ADDFEAAFRD FDDDNSKDDA  60
EMAEAEEVAE SKPFVFRAAP SAKRHGGGRR KPPAQYRGVR RRPWGKWAAE IRDPVKGVRV  120
WLGTYSSAEA AARAYDAAAR DIRGSRAKLN FPETSCSASD SAPAGRKRAS AVPAALVIDL  180
VFDEVEEDNA ASVKHEAEAS QSSDESGHAL LPDFSWQGVS ALDFAVAQPA LDVEPAGAGK  240
RMRTEETPAE RAGDEEASPA SSESDALFDA FLFCDQYPFF GGGGGGAYES LDSLFSADAV  300
QGGSAADEGM GLWSFDDDCL LVEDNLSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1995152563ATERF1
3gcc_A1e-1995152563ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685511e-60BT068551.1 Zea mays full-length cDNA clone ZM_BFb0310P02 mRNA, complete cds.
GenBankEU9557151e-60EU955715.1 Zea mays clone 1543173 ethylene-responsive element binding protein 2 mRNA, complete cds.
GenBankEU9559811e-60EU955981.1 Zea mays clone 1554709 ethylene-responsive element binding protein 2 mRNA, complete cds.
GenBankKJ7276121e-60KJ727612.1 Zea mays clone pUT5520 AP2-EREBP transcription factor (EREB182) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797880.11e-101ethylene-responsive transcription factor ERF073-like
TrEMBLA0A2T7CGR11e-101A0A2T7CGR1_9POAL; Uncharacterized protein
STRINGPavir.Ia04158.1.p1e-89(Panicum virgatum)
STRINGSi036118m7e-90(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.34e-23ERF family protein