PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g10820.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 352aa    MW: 39499.6 Da    PI: 10.1266
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g10820.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.82.3e-07228274145
                             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAaka 45 
                                     s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +++Aa+a
  Zjn_sc00003.1.g10820.1.sm.mkhc 228 SQYRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDEEKKAARA 274
                                     78*******************332.33433324433.446665555554 PP
2AP221.94.3e-07318348336
                             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 
                                     y+GV+++++ grW A+I  +     +k  +lg+f
  Zjn_sc00003.1.g10820.1.sm.mkhc 318 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTF 348
                                     9***************988532...5*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-6228277IPR016177DNA-binding domain
PROSITE profilePS5103210.31229292IPR001471AP2/ERF domain
SMARTSM003809.1E-5229291IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-5316349IPR016177DNA-binding domain
PROSITE profilePS510329.848317352IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-4317350IPR001471AP2/ERF domain
SMARTSM003800.016317351IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAIAAVEGAR PVMERDLALP RRQLRLSWLC RCSPVALFRR LLPIKDPGYW RSAEAEGPKL  60
EDFMSVTCSN KSGSIDAVQS KYNEVHDLQP LSSSYYYHNH GSGGGIDLEI NVNAPPSSGH  120
PEHRVLSPQN HHYHHHFLPH HGQYFLSTPA NPSPSGAMPV MPMYNAAAGV GSSMSISGIK  180
SWLREAMYVP ERSSALSLSV ADMPSEPLPA PMPVAARRPS ETFGQRTSQY RGVTRHRWTG  240
RYEAHLWDNT CRKEGQTRKG RQGGYDEEKK AARALRFGSA QLSTYEKELE EMKHMSRQEF  300
IARLRRNSGG FSRGASMYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFSK SC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851154e-64AY685115.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D14 (AP2D14) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796834.11e-136AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A3L6TIN71e-141A0A3L6TIN7_PANMI; Uncharacterized protein
STRINGSi035073m1e-131(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3168344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.16e-71AP2 family protein