PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g10980.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 85aa    MW: 9721.93 Da    PI: 7.3652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g10980.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.1e-0911521454
                                  HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
                           HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                                  d+iN+ +++L++llP++s + ++ + s +  L++++ YIksL
  Zjn_sc00003.1.g10980.1.sm.mk 11 DEINELISKLQDLLPESSrRRNASRSSASKLLKETCSYIKSL 52
                                  68**************6647777889***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.036152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-101169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-91171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-61152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MSGRRGRISD DEINELISKL QDLLPESSRR RNASRSSASK LLKETCSYIK SLHREVDDLS  60
DRLSELMSTM DNDSPQAEII RSLLR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0935831e-101FP093583.1 Phyllostachys edulis cDNA clone: bphyst039h19, full insert sequence.
GenBankFP0952201e-101FP095220.1 Phyllostachys edulis cDNA clone: bphyst033d21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613962.19e-42transcription factor ILI3-like
SwissprotA2XD153e-35ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R473e-35ILI3_ORYSJ; Transcription factor ILI3
TrEMBLA0A0A9F9074e-50A0A0A9F907_ARUDO; Uncharacterized protein
STRINGOGLUM10G09100.13e-41(Oryza glumipatula)
STRINGOMERI10G06270.13e-41(Oryza meridionalis)
STRINGORUFI10G09690.13e-41(Oryza rufipogon)
STRINGOS10T0403800-003e-41(Oryza sativa)
STRINGORGLA10G0079400.13e-41(Oryza glaberrima)
STRINGOBART10G09290.13e-41(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.19e-26bHLH family protein