PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g11540.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 493aa    MW: 55129.2 Da    PI: 6.8861
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g11540.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind78.21.4e-2417024022101
                                   SSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  22 sengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                                    + gnsf+v+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k+++ +         weF+++ F +g+++ll++ikr++
  Zjn_sc00003.1.g11540.1.am.mk 170 GRGGNSFIVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDSGR---------WEFANEGFLRGHRHLLRTIKRRR 240
                                   5679****************************************9988.........*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-40158239IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.07E-25159239IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-26170239IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.4E-22171239IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-9188200IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340189213IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-9201213IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MSTVDCPLAP GAPTTATPPA TRTFRARPAT NAPLGLVSSI PVLTRPVPSY GIEDLAGIYL  60
CRLPRSPRSR DLFPARDAPT WLSPLVEYCS SAASRFLGIV DLDSRGPDKD HWSDAMDHLP  120
LLGMATVKKE WPPSSPPEEE VMNAVGAPRP MEGLHEVGPP PFLTKTFDLG RGGNSFIVWD  180
PHVFAAVLLP RFFKHNNFSS FVRQLNTYGF RKIDSGRWEF ANEGFLRGHR HLLRTIKRRR  240
PPSYLAASQQ QHQQALGSYL EFGHFGVDDE IERLKRDKNI LLAEVVKLRQ EQQSAKADVQ  300
AMEEWLQRAE SKQVQMMGFL ARAMQNPDFL HQLLLAHQHQ GKGNELEDAF SKERRRSIHI  360
IPAATASSCQ TTAWQCEEEL DSSAVLFRSS CRQFEELSEP RTSELENLAL SIQGLGKRKH  420
DENSQAGGGR SSNQDGETAE LTDDFWKELL SEGMRGEGDM SVAEVEERRR PPPGRYVDAL  480
AQRLGLLSNS TAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-1416023918120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985605.11e-145heat stress transcription factor A-2d
RefseqXP_006649439.21e-145PREDICTED: heat stress transcription factor A-2d
SwissprotQ8H7Y61e-146HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A1E5WLF61e-160A0A1E5WLF6_9POAL; Heat stress transcription factor A-2d
STRINGSi038907m1e-145(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.15e-85heat shock transcription factor A6B