PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g14420.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 308aa    MW: 32504.9 Da    PI: 8.1558
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g14420.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.5e-14111162155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er+RR+ +N+ ++ Lr l+P++   + ++ + a+++  A++Y+k+L+
  Zjn_sc00003.1.g14420.1.am.mk 111 QRMTHIAVERNRRRLMNDHLASLRALIPPS---YIPRGDQATVVGGAIDYVKQLE 162
                                   79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-15102171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-13109165No hitNo description
Gene3DG3DSA:4.10.280.109.9E-14109165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.072110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-11111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-9116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVVMEQWADH QAVSTSSATA QMPFLALLQG AVVENDDDGL RKRAASFAAC AAAADLDLFE  60
SCVTQAAAVT VASSAAPATR ADSRRRKRPR PRPRAAPQQE KRKKPEEAES QRMTHIAVER  120
NRRRLMNDHL ASLRALIPPS YIPRGDQATV VGGAIDYVKQ LEQQLVALQA EAAARRGCCV  180
GVGAVATAAS AASDGVFVSP QYASYSESPR GCAAGVDVEA TGAATGAVGG HVRVRVAGRR  240
WPGRLVRAVA ALEDLRLAVL HLAVTSVGHD AVVYCFNLKM EDGCEVATAD EVATVVHQIF  300
AYAAGTCC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18393RRRKRPRPRPR
28591RKRPRPR
385103RKRPRPRPRAAPQQEKRKK
48690KRPRP
5111122RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554703e-83AK355470.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1021A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798239.11e-122transcription factor bHLH57-like
TrEMBLA0A1D6PKX51e-129A0A1D6PKX5_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGMLOC_55870.11e-119(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-25bHLH family protein