PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g14520.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 635aa    MW: 70365.6 Da    PI: 6.7946
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g14520.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM141.93.7e-4461151128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrFhPtdeel+ +yLk+k++++++el e+i+evd+yk+ePwdLp                d+ky++g+r+nratksg
  Zjn_sc00003.1.g14520.1.am.mk   6 LPPGFRFHPTDEELIIYYLKRKINRRQIEL-EIIPEVDLYKCEPWDLP----------------DRKYPNGSRTNRATKSG 69 
                                   79****************************.99**************9................789************** PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yWkatgkd++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl
  Zjn_sc00003.1.g14520.1.am.mk  70 YWKATGKDRKVNS-HRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 115
                                   *************.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-544138IPR003441NAC domain
PROSITE profilePS5100548.4946138IPR003441NAC domain
PfamPF023651.3E-247115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI IYYLKRKINR RQIELEIIPE VDLYKCEPWD LPDRKYPNGS  60
RTNRATKSGY WKATGKDRKV NSHRRAVGMK KTLVYYRGRA PHGSRTDWVM HEYRLDEREC  120
ETDTGLQDAY ALCRVFKKTA PGPKIIEHYG AVQHHIEPPP WTPSRVDHRS PTMDMPCDVR  180
GDDFESSSFS FPVETPMDSM HGGFGMQMSA SHEDGKWMQF LSEDAFNATN PLFNPASSSF  240
SCIPSKVDVA LECARLQHRL SLPPLEAEDF PHDVSLDTKT SVLRSNSNEV DILQEFLSVA  300
SASQELINGS SSSYAAGMWP GAGSSNASTH YSNELASLVE LGVKAKVEAD NFYHIEGCVG  360
TSSGFALKLG HIDEPVRLVE ISDMGEELEE EKKQQVENLR GVRLHNNDLG EIAGKSGHLT  420
DPTDADGLDY TAPIFSQSQP DGFAIGFDDV NPSASFELYE KKVDVKHAGL LVSRVGAAET  480
FFHRVEPSKK VSFHLSPVAS DVSEAIEKFH FPISVTIKVS GRVSIFSKFK ALIRGKFLLK  540
PSNRRSLRAK ETASGSELLD IVTLLFTPKE ATGPTAEHEL VKKAMKVMKP GCCCDGKSAW  600
LPLSKGSKGI SSLFLDGKWA FLTSASAIRT LGHNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-44114412171NO APICAL MERISTEM PROTEIN
1ut4_B2e-44114412171NO APICAL MERISTEM PROTEIN
1ut7_A2e-44114412171NO APICAL MERISTEM PROTEIN
1ut7_B2e-44114412171NO APICAL MERISTEM PROTEIN
3swm_A2e-44114415174NAC domain-containing protein 19
3swm_B2e-44114415174NAC domain-containing protein 19
3swm_C2e-44114415174NAC domain-containing protein 19
3swm_D2e-44114415174NAC domain-containing protein 19
3swp_A2e-44114415174NAC domain-containing protein 19
3swp_B2e-44114415174NAC domain-containing protein 19
3swp_C2e-44114415174NAC domain-containing protein 19
3swp_D2e-44114415174NAC domain-containing protein 19
4dul_A2e-44114412171NAC domain-containing protein 19
4dul_B2e-44114412171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468623.10.0uncharacterized protein LOC8085734
TrEMBLK4A6N60.0K4A6N6_SETIT; Uncharacterized protein
STRINGPavir.Ia04558.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66243651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-108NAC domain containing protein 28