PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g00650.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 354aa    MW: 39719.5 Da    PI: 7.1943
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g00650.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.45.8e-1451891856
                                  HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                   F+ +++p++++r+ ++++lgL+ rq+k+WFqNrR+ +k
  Zjn_sc00004.1.g00650.1.sm.mk 51 IFKDCPHPDENQRAVMSRELGLEPRQIKFWFQNRRTHMK 89
                                  599********************************9988 PP
2START64.72.8e-2122733578164
                                   EEEEEEEECTT........................EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-T CS
                         START  78 kaetlevissg........................galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdse 133
                                   ka t++v+ +g                         ++++ + el  ++plvp R+f f+Ry++q ++g w++vdvS d +
  Zjn_sc00004.1.g00650.1.sm.mk 227 KAHTVDVLVNGiggrnesliminnncvmmttqvtnDFVTQVYEELHTMTPLVPtREFSFLRYCKQIEQGLWAVVDVSMDGQ 307
                                   555555555555555555555555555555555556777777788888*******************************99 PP

                                   TS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
                         START 134 qkppesssvvRaellpSgiliepksnghskv 164
                                    +     +  R+++lpSg+li ++sng+skv
  Zjn_sc00004.1.g00650.1.sm.mk 308 HYGV---PPSRSRRLPSGCLIADMSNGYSKV 335
                                   9987...467999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.82E-13994IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-181096IPR009057Homeodomain-like
SMARTSM003893.0E-81495IPR001356Homeobox domain
CDDcd000868.88E-141692No hitNo description
PfamPF000462.2E-115189IPR001356Homeobox domain
PROSITE profilePS5007113.0055291IPR001356Homeobox domain
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PROSITE profilePS5084817.277216336IPR002913START domain
PfamPF018522.6E-16257335IPR002913START domain
SuperFamilySSF559611.79E-13258336No hitNo description
PROSITE patternPS001970337345IPR0060582Fe-2S ferredoxin, iron-sulphur binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDFGDEPEGS SSQRRRKGYH RHTPRQIQQL EAPCGTVLIA SPAIAVIDVM IFKDCPHPDE  60
NQRAVMSREL GLEPRQIKFW FQNRRTHMKA QHERADNCFL RTENDKIRCE NISMREALRN  120
VICPNCGGPP VAEDYFDEHK LRTENASLKE ELERISSFTS KHLGRSFMPM PPMPTMPASG  180
LDLSVGTMSA PALDLDLLGS GSTGSRMGPF SCVTNKWMEV FPGIVSKAHT VDVLVNGIGG  240
RNESLIMINN NCVMMTTQVT NDFVTQVYEE LHTMTPLVPT REFSFLRYCK QIEQGLWAVV  300
DVSMDGQHYG VPPSRSRRLP SGCLIADMSN GYSKVSCAKA DCSTCTCFVL FARW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668139e-93BT066813.2 Zea mays full-length cDNA clone ZM_BFb0073D09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020399989.11e-134homeobox-leucine zipper protein ROC8
RefseqXP_020399990.11e-134homeobox-leucine zipper protein ROC8
SwissprotQ69T581e-129ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A1D6NSI31e-133A0A1D6NSI3_MAIZE; Homeobox-leucine zipper protein HDG11
TrEMBLG2J5T11e-133G2J5T1_MAIZE; Homeodomain leucine zipper family IV protein
STRINGORGLA06G0247800.11e-130(Oryza glaberrima)
STRINGSb10g006820.11e-129(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4240423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.17e-65homeodomain GLABROUS 11