PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00004.1.g01390.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 447aa MW: 47976.4 Da PI: 5.1138

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00004.1.g01390.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.1	4.8e-11	320	365	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +Ka+ L + ++Y+k Lq Zjn_sc00004.1.g01390.1.am.mkhc 320 HSIAERLRREKISDRMKNLQDLVPNS-----NKADKASRLDEIIDYVKFLQ 365 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-15	313	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.64E-11	313	369	No hit	No description
PROSITE profile	PS50888	16.456	315	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.6E-15	319	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-8	320	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-11	321	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MENSSGSYLS SWPAPESYSS AAGSVESYAG EGNMPPSSYF MNAISDHSLK FNDQEQNSTL 60 LSNGCLAYSA QADLLSGEIL SKDKLTSNLM EVQQLQSRSN QQSNLVNQGV FQKNSTPEIF 120 YPQLDTPRFA ELPQTLSSSI DSNGSGVSAF LTDIHAASSA STFCSTYENC SSFMEPVNIE 180 AYSFGVQNDV MLNKTDHPSG NTSAFGNSAS ATLIDGKDFI SGRLPSFATI HETNLPASGF 240 KAQKQEQNAI SDVPIPTAIG PMAVTAKQGT LIPPKMPSWT NDNKSEGPVS PPGVQPKVNG 300 NGVGVKPRAR ARRGQATDPH SIAERLRREK ISDRMKNLQD LVPNSNKADK ASRLDEIIDY 360 VKFLQLQVKG YCGQPLSAPT TPHGQPDAQD SEDTLAFEQE VVKLMETSIT SAMQYLQNKG 420 LCLMPVALAS SISNQKGTAA AAVPTQR

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MENSSGSYLS SWPAPESYSS AAGSVESYAG EGNMPPSSYF MNAISDHSLK FNDQEQNSTL  60
LSNGCLAYSA QADLLSGEIL SKDKLTSNLM EVQQLQSRSN QQSNLVNQGV FQKNSTPEIF  120
YPQLDTPRFA ELPQTLSSSI DSNGSGVSAF LTDIHAASSA STFCSTYENC SSFMEPVNIE  180
AYSFGVQNDV MLNKTDHPSG NTSAFGNSAS ATLIDGKDFI SGRLPSFATI HETNLPASGF  240
KAQKQEQNAI SDVPIPTAIG PMAVTAKQGT LIPPKMPSWT NDNKSEGPVS PPGVQPKVNG  300
NGVGVKPRAR ARRGQATDPH SIAERLRREK ISDRMKNLQD LVPNSNKADK ASRLDEIIDY  360
VKFLQLQVKG YCGQPLSAPT TPHGQPDAQD SEDTLAFEQE VVKLMETSIT SAMQYLQNKG  420
LCLMPVALAS SISNQKGTAA AAVPTQR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002438003.1	0.0	transcription factor bHLH66 isoform X2
TrEMBL	A0A3L6DEA7	0.0	A0A3L6DEA7_MAIZE; Transcription factor bHLH82
STRING	Sb10g006250.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3254	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	3e-47	LJRHL1-like 3