PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g01940.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 164aa    MW: 17891.2 Da    PI: 6.7861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g01940.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-19756255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                  +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  Zjn_sc00004.1.g01940.1.am.mk  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARIMCG 56
                                  69******9.**********8.....334**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.27E-30664No hitNo description
Gene3DG3DSA:3.30.730.101.6E-33764IPR001471AP2/ERF domain
SMARTSM003801.4E-37770IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-20764IPR016177DNA-binding domain
PfamPF008472.4E-11755IPR001471AP2/ERF domain
PROSITE profilePS5103220.692764IPR001471AP2/ERF domain
PRINTSPR003672.5E-11819IPR001471AP2/ERF domain
PRINTSPR003672.5E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MARSQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARIMCGPRVR  60
TNFPSGDAAS SFLSPALVAK LHRFNLASVQ QARGDKADAC MTTAPAVLPR EAMPAGSASM  120
GIAPAPSAAG PGWSGGEGVF LEEQYVDQMI EELLDSNFAM ETSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-16664463ATERF1
3gcc_A3e-16664463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9681126e-77EU968112.1 Zea mays clone 314589 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813619.11e-81ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW56e-47ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A2S3HL983e-80A0A2S3HL98_9POAL; Uncharacterized protein
TrEMBLA0A2T7E2423e-80A0A2T7E242_9POAL; Uncharacterized protein
STRINGPavir.Da02059.1.p2e-81(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-36ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]