PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g03090.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 138aa    MW: 15050 Da    PI: 9.8583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g03090.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.0005654743454
                                    TTS-STCHHHHHHHHHHHHHH CS
                             HLH 34 pskKlsKaeiLekAveYIksL 54
                                     s+K + a++L++A  YIk L
  Zjn_sc00004.1.g03090.1.sm.mkhc 54 ISPKTDTASVLQEASAYIKFL 74
                                    589****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-75189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-45481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MMMAAELANH GKRSHTDSYF SGKAVTVTTG AEEFGAMSSK KPRNTTSPRT APPISPKTDT  60
ASVLQEASAY IKFLHQQLEV LSSPYLRPPP MAGAAPEDPD HYSLRNRGLC LVPVDLTLQL  120
TQSNGADLWA PANRTRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0993902e-79FP099390.1 Phyllostachys edulis cDNA clone: bphyem126i22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636771.12e-70transcription factor bHLH153
RefseqXP_015636772.12e-70transcription factor bHLH153
SwissprotQ7XJU22e-26BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A1E5VJ382e-72A0A1E5VJ38_9POAL; Uncharacterized protein
STRINGOMERI04G13740.11e-70(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5272812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.57e-29bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]