PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g04040.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 253aa    MW: 28556.1 Da    PI: 8.3954
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g04040.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-17653148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g WTt+Ed+ll++ v+q+G g W++++++ g++R +k+c++rw +yl
  Zjn_sc00004.1.g04040.1.am.mk  6 KGLWTTQEDKLLIEHVRQHGDGGWNSVSKHTGLKRNGKSCRLRWVNYL 53
                                  678*****************************9*************97 PP
2Myb_DNA-binding52.11.5e-1660103247
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   gr T +E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
  Zjn_sc00004.1.g04040.1.am.mk  60 GRITSQEERIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 103
                                   789******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.874153IPR017930Myb domain
SMARTSM007176.3E-13555IPR001005SANT/Myb domain
SuperFamilySSF466892.2E-285100IPR009057Homeodomain-like
PfamPF002498.2E-16653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-21760IPR009057Homeodomain-like
CDDcd001671.31E-10953No hitNo description
PROSITE profilePS5129424.02754108IPR017930Myb domain
SMARTSM007176.1E-1558106IPR001005SANT/Myb domain
PfamPF002491.3E-1360103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2361106IPR009057Homeodomain-like
CDDcd001671.32E-1063104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MVHSLKGLWT TQEDKLLIEH VRQHGDGGWN SVSKHTGLKR NGKSCRLRWV NYLRPDLKHG  60
RITSQEERII VQLHALWGNR WSTIARSLPG RTDNEIKNYW RTHFKKAKPS KNIERARAQF  120
LKQRREMQCQ QQQQLQLVRK NEDSKLDATR TAGTVEDEDR GSAVVDNACP ATTTAAVADQ  180
SGHHLAADLV MHDAIMDFMF PMSFSLLLHV AGGCCGSTSE EYRSSEEDGA TWGSLWNLED  240
VFVNGGGGAC SLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-26610627126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. {ECO:0000250|UniProtKB:Q38850}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978126.11e-102transcription repressor MYB6
SwissprotQ9SDS81e-45MYB8_ARATH; Transcription factor MYB8
TrEMBLA0A3L6PVQ31e-104A0A3L6PVQ3_PANMI; Transcription repressor MYB6-like
STRINGSi010822m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-59myb domain protein 79
Publications ? help Back to Top
  1. Zhu J, et al.
    Retraction for Zhu et al., HOS10 encodes an R2R3-type MYB transcription factor essential for cold acclimation in plants.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(31): p. 13972
    [PMID:20622156]