PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00004.1.g04990.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 171aa MW: 18024.5 Da PI: 11.0727

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00004.1.g04990.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113	4.2e-35	20	102	3	87
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssa 82 +k + ++++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++t+eWLl+qa+p+i ++tg+++s+a +c ss s+ Zjn_sc00004.1.g04990.1.am.mk 20 KKPSGSKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTVEWLLRQAEPSILAATGSGTSPAvFSC---SSAPST 97 5667789********************************************************999995444...222222 PP TCP 83 snsss 87 s+ss Zjn_sc00004.1.g04990.1.am.mk 98 SSSSR 102 21111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.3E-31	24	119	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.73	25	79	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MSLAALAPTD AAVATAPARK KPSGSKDRHS KVNGRGRRVR MPIVCAARVF QLTRELGLKS 60 DGQTVEWLLR QAEPSILAAT GSGTSPAVFS CSSAPSTSSS SRSLLLGKRP RQDVDEAPPP 120 LWAAMQARPV VVAWGLSTPA QEQAYASEAQ GHRLNLPSVL SGTTKPAEES R

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269\|PubMed:19286557}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU967480	1e-81	EU967480.1 Zea mays clone 303582 TCP-domain protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003580173.1	5e-63	transcription factor TCP21
Refseq	XP_004976294.1	4e-63	transcription factor PCF1
Swissprot	Q9FTA2	7e-38	TCP21_ARATH; Transcription factor TCP21
TrEMBL	A0A0A9DEW8	2e-80	A0A0A9DEW8_ARUDO; Uncharacterized protein
STRING	Traes_2BL_4B6057E06.1	4e-66	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	4e-37	TCP family protein

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Ng DW,Chen HH,Chen ZJ Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids. Sci Rep, 2017. 7: p. 45087 [PMID:28345627] Lee CM, et al. Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins. Plant Physiol., 2018. 177(3): p. 1170-1186 [PMID:29794020]