PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g05180.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 562aa    MW: 59137.6 Da    PI: 10.7596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g05180.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-18315365256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++ + kl+ge
  Zjn_sc00004.1.g05180.1.am.mk 315 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAAMAYDREAFKLRGE 365
                                   59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.66E-30314373No hitNo description
PROSITE profilePS5103222.787315372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-31315373IPR001471AP2/ERF domain
SMARTSM003807.5E-38315378IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22315374IPR016177DNA-binding domain
PRINTSPR003674.5E-10316327IPR001471AP2/ERF domain
PfamPF008479.7E-12316365IPR001471AP2/ERF domain
PRINTSPR003674.5E-10338354IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MTCRDQGITT VTGGCGAGHR PGIVSLAHSA ASAPTFFFLS PPNAVIPWHQ KQNATTRTPA  60
PRAASGRSPA DRFITGSSFA SPRSKLASAS VSLRALAIAS IELEMEGSSG SGESSGGGSG  120
GAGGRGRRWK GKDITPIQPR RQLAPVMEDA SVASLRPLRK IGRASDRLQR SASSLSKYSS  180
SSSAPPSPRS SAISSSASSG RHIFPFAYEP STPAGGPFPA WQQSSSASQP ASPQQQKPRP  240
SLQRQGQQMI SFGAPPPQYE AQLLRPESAQ QQQQMLRYWS EALNLSPRGG QAGGGVLPSL  300
YQHLMRAPPP PPQKLYRGVR QRHWGKWVAE IRLPRNRTRL WLGTFDSAED AAMAYDREAF  360
KLRGENARLN FPDRFLGKGR AGGSGRTSAS SAAASAALGA GLSSSSPSPP KTPEEASMQQ  420
TTALRRAGGS VDKQTTQPLV AASSAQEGSS SDMAMPHSAE MFHAPMASGS DWGPADEAWF  480
STWGPGSSLW DYDMDSARGL FLHGRFASDE AGVERSNAQG TTATNAAATG TDMACDHVPP  540
VTPASSSPTH SQTPPDTSNF KS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19314374465ATERF1
3gcc_A2e-19314374465ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824927.11e-177ethylene-responsive transcription factor ERF054-like isoform X1
TrEMBLA0A2S3I9S31e-175A0A2S3I9S3_9POAL; Uncharacterized protein
STRINGSi012169m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-36ERF family protein