PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g06160.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 206aa    MW: 22824.2 Da    PI: 11.4986
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g06160.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.34.7e-092182166
                      trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66
                                  +Wt +e+laL +a++ +  +++r+ l  ++W++v+++      ++++ qC++k e+l++r +  ++
  Zjn_sc00004.1.g06160.1.sm.mk 21 CWTPDETLALARAYTARRLAVGREHLTSADWAAVAAAAP----SKTARQCRHKVEKLRRRLRSSRR 82
                                  8*********************************99865....689*************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.58E-51872IPR009057Homeodomain-like
PfamPF138372.1E-72082No hitNo description
Gene3DG3DSA:1.10.10.601.2E-42273IPR009057Homeodomain-like
PROSITE profilePS500906.3072274IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MASPSASPRA NGSGRRVPPP CWTPDETLAL ARAYTARRLA VGREHLTSAD WAAVAAAAPS  60
KTARQCRHKV EKLRRRLRSS RRRPCPLLDA IDLLDGPSPP IMSRVKSPSP SRSPSPPPAV  120
SLPSPYSSPA SPPRKRRRDD YGDEYGVSDL VGALRVIGEG FLRAEERRME AARETQRMRM  180
DMALRHLDAQ RRLMEVFVGR IVDALD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17177KLRRRLR
27278LRRRLRS
3133137RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144478.12e-86uncharacterized protein LOC100277445
TrEMBLB6TUK06e-85B6TUK0_MAIZE; FRIGIDA interacting protein 2
STRINGGRMZM2G320827_P019e-86(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139112024