PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g06360.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 479aa    MW: 51493.9 Da    PI: 8.9723
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g06360.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18282332255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ +Aa+a+++a+  ++g
  Zjn_sc00004.1.g06360.1.am.mk 282 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVDAARAYDRAAFGMRG 332
                                   8********.**********96554..**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-31281341IPR001471AP2/ERF domain
PROSITE profilePS5103223.472282340IPR001471AP2/ERF domain
SMARTSM003804.8E-36282346IPR001471AP2/ERF domain
PfamPF008472.1E-12282332IPR001471AP2/ERF domain
CDDcd000181.25E-17282341No hitNo description
SuperFamilySSF541719.15E-22282341IPR016177DNA-binding domain
PRINTSPR003671.2E-12283294IPR001471AP2/ERF domain
PRINTSPR003671.2E-12322342IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MIKRASNGIN LRLRAYVGLV VAWSAHRHGV KAGEMNQSAR PQLHGLQATS SGHRLYVRAS  60
SRPLACRRRS SSNIISHDPG ARSILCSSDE RQYIAKARTL DTSLLPVRAR VPVSRPHGFC  120
RLILACARDQ ERPPELYSDM DFTGDADNFA LDFGLIREHL LGGSSGVPEA SPVVSGDASF  180
IVQAHHSAEL CQSMAFLPQQ QHFEYIDMKH EYMGSAAPAV SGCEAAFSFR AAQEPAAPVM  240
IKFGSAPSSP ARQAPLTISV PPSSYAWAAP AAAPAPVEDY RKYRGVRQRP WGKYAAEIRD  300
PKRRGSRVWL GTYDTPVDAA RAYDRAAFGM RGAKAILNFP NEVGTCGADL WTPPPAPATQ  360
GATANKRKRQ QEEPDVEVVA VVNKVAKTEA SSSILTQASS FTSPSSMSTR ETTATASSTV  420
TSTETSTDYA GSGTEGFPAE VATSSWSLDQ SWEAWLGALT PLSPLSPHPS LGFPPLIVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-25281345468ATERF1
3gcc_A7e-25281345468ATERF1
5wx9_A8e-252793421174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275257e-85KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140538.15e-98uncharacterized protein LOC100272603
TrEMBLB4FPJ91e-96B4FPJ9_MAIZE; Ethylene-responsive transcription factor ERF105
TrEMBLK4JFF81e-96K4JFF8_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM5G805505_P012e-97(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-30ethylene responsive element binding factor 5