PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g06380.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 305aa    MW: 33250.1 Da    PI: 4.5026
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g06380.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19128179256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+GVr+++ +g++vAeIrdp+ +g   r++lg+++ + +Aa+a+++a+ +++g+
  Zjn_sc00004.1.g06380.1.am.mk 128 KYRGVRQRP-WGKYVAEIRDPKRRG--SRVWLGTYDLPIDAARAYDRAAFRMRGA 179
                                   8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-21128187IPR016177DNA-binding domain
SMARTSM003804.4E-35128192IPR001471AP2/ERF domain
PROSITE profilePS5103222.998128186IPR001471AP2/ERF domain
CDDcd000181.19E-18128187No hitNo description
Gene3DG3DSA:3.30.730.101.4E-31128187IPR001471AP2/ERF domain
PfamPF008477.1E-14128178IPR001471AP2/ERF domain
PRINTSPR003671.5E-13129140IPR001471AP2/ERF domain
PRINTSPR003671.5E-13168188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDFTGDGDDF VLNFISEHLL RNEDGFPEAG WVVSGNPSFP VQPPPAAEPF EPMPFLPQQQ  60
QQPERYVDMT HDHTGAAPAA AVAEEAFRVA QEPAPQPMMI TLESEPLSPA SSHEWAASAP  120
APVEDFHKYR GVRQRPWGKY VAEIRDPKRR GSRVWLGTYD LPIDAARAYD RAAFRMRGAK  180
AILNFPNELG TRGADLLAST PASAKKRKLQ QVDPDVEVVR VVNKAPSADE VPSWTSTPLS  240
STSSSSCIFT CQTTEIVSST VTSTETTLVG DGADGFPGTP SSWSWEELLC GLSPHPPLID  300
VVDYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-25129186663ATERF1
3gcc_A7e-25129186663ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140538.12e-70uncharacterized protein LOC100272603
TrEMBLA0A3B6CB951e-70A0A3B6CB95_WHEAT; Uncharacterized protein
TrEMBLA0A446MLS71e-70A0A446MLS7_TRITD; Uncharacterized protein
STRINGGRMZM5G805505_P019e-70(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.18e-21ethylene responsive element binding factor 5