PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g06420.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 234aa    MW: 25890.6 Da    PI: 8.7139
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g06420.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33e-1975129256
                                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     rk+ +++k+q  +Le+ F+++++++ ++++ LA++lgL  rqV vWFqNrRa+ k
  Zjn_sc00004.1.g06420.1.sm.mkhc  75 RKKLRLSKDQSVVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARTK 129
                                     788899***********************************************98 PP
2HD-ZIP_I/II128.13.6e-4175164191
                     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 
                                     +kk+rlsk+q+ +LE+sF+e+ +L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+r
  Zjn_sc00004.1.g06420.1.sm.mkhc  75 RKKLRLSKDQSVVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRR 153
                                     69***************************************************************************** PP

                     HD-ZIP_I/II  80 LekeveeLreel 91 
                                     L+kev+eLr +l
  Zjn_sc00004.1.g06420.1.sm.mkhc 154 LQKEVQELR-AL 164
                                     ********9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.52E-1966132IPR009057Homeodomain-like
PROSITE profilePS5007117.15171131IPR001356Homeobox domain
SMARTSM003892.1E-1773135IPR001356Homeobox domain
PfamPF000461.4E-1675129IPR001356Homeobox domain
CDDcd000862.46E-1675132No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1875129IPR009057Homeodomain-like
PRINTSPR000314.1E-6102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000314.1E-6111127IPR000047Helix-turn-helix motif
SMARTSM003404.4E-25131174IPR003106Leucine zipper, homeobox-associated
PfamPF021832.1E-11131165IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MMERADDLGL SLSLSLSSSL APRTHHHVAM LLRSPEKRFL EMPLLPAKRS EVAAEEGLRG  60
GSDEEDGGCG IDGSRKKLRL SKDQSVVLED SFREHPTLNP RQKAALAQQL GLRPRQVEVW  120
FQNRRARTKL KQTEVDCEFL KRCCETLTEE NRRLQKEVQE LRALKLVSPH LYMHMSPPTT  180
LTMCPSCERV SNANSADRRA GAGSVDASTA AAGVDGAICH RPIAVRPLQS LASS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379SRKKLRL
2123131RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749801e-156EU974980.1 Zea mays clone 462177 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
GenBankKJ7283621e-156KJ728362.1 Zea mays clone pUT6644 HB transcription factor (HB53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824502.11e-130homeobox-leucine zipper protein HOX17-like
SwissprotQ0JB921e-110HOX17_ORYSJ; Homeobox-leucine zipper protein HOX17
TrEMBLA0A2S3I9181e-129A0A2S3I918_9POAL; Uncharacterized protein
TrEMBLA0A2T7CY881e-129A0A2T7CY88_9POAL; Uncharacterized protein
STRINGSi010958m1e-129(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.17e-75homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]