PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00004.1.g07230.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 444aa MW: 48202 Da PI: 10.465

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00004.1.g07230.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	37.1	8.2e-12	398	440	2	44
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-T CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCq 44 C ++ +adls+ ++yhrr kvCe+h k+ vv+v+g+e fC Zjn_sc00004.1.g07230.1.am.mk 398 CALDESKADLSNYQDYHRRRKVCETHCKTLVVFVAGREMLFCP 440 999***************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.6E-13	390	440	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	12.964	395	444	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.94E-11	396	441	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.0E-9	398	439	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MQKLGRNAAT IRASAATKTP QLNLDPPAAT AAATRTRQCP LNPGQERANS LTCTRAIAAA 60 AIPRRRPTGA IPSHRLAVEP SRHHEMPRRT GWGRQGGGSR DWCWEVWTFL ERSEPPPPRY 120 NAEGGRAAHE LAVAPPHAGL KNTAEEANGI SSPVFTTSSS SARASVLPIS RPPNLRERLG 180 GWSSSGRGEC GGTSLAPRRF LLVERSALLA LDWWVELAAN QSAPVTCPAR EVTAAYPHRR 240 SSIQTHWPAS AREKIIPDAS LWPVGTGRAA EWIWEPENEA AAPRDGGHVR RRRSLFSAPQ 300 PLRDERAKLS RTQAGTRRLL PHSQITDEGG GLESVVTAGG WNVEHGAVWT SRSSGASSTG 360 GPGSADLKLG GVDEYELSDG GRRLARDRQK HGQQCPSCAL DESKADLSNY QDYHRRRKVC 420 ETHCKTLVVF VAGREMLFCP TSPR

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MQKLGRNAAT IRASAATKTP QLNLDPPAAT AAATRTRQCP LNPGQERANS LTCTRAIAAA  60
AIPRRRPTGA IPSHRLAVEP SRHHEMPRRT GWGRQGGGSR DWCWEVWTFL ERSEPPPPRY  120
NAEGGRAAHE LAVAPPHAGL KNTAEEANGI SSPVFTTSSS SARASVLPIS RPPNLRERLG  180
GWSSSGRGEC GGTSLAPRRF LLVERSALLA LDWWVELAAN QSAPVTCPAR EVTAAYPHRR  240
SSIQTHWPAS AREKIIPDAS LWPVGTGRAA EWIWEPENEA AAPRDGGHVR RRRSLFSAPQ  300
PLRDERAKLS RTQAGTRRLL PHSQITDEGG GLESVVTAGG WNVEHGAVWT SRSSGASSTG  360
GPGSADLKLG GVDEYELSDG GRRLARDRQK HGQQCPSCAL DESKADLSNY QDYHRRRKVC  420
ETHCKTLVVF VAGREMLFCP TSPR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP32817	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.4	1e-08	squamosa promoter binding protein-like 10