PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00004.1.g07450.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 201aa MW: 22719.1 Da PI: 10.5221

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00004.1.g07450.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89	4.3e-28	19	69	2	52
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 pr+rWt+eLH++F++a+e LGG++kAtPk il++m+ +gLt++hvkSHLQk Zjn_sc00004.1.g07450.1.sm.mk 19 PRMRWTTELHRSFLQAIECLGGQDKATPKLILRFMGAEGLTISHVKSHLQK 69 9*************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-26	15	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.38E-15	16	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-22	19	69	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-7	20	69	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MGSGCRNGAV RRYNRSKEPR MRWTTELHRS FLQAIECLGG QDKATPKLIL RFMGAEGLTI 60 SHVKSHLQKR EVWTVWRRKK RAEMGTEASY KGMQGSQGIS EMRTAANQYY CMHDYMQAMA 120 MEGRIKQEGL RWQRDAAAAA AADVVSSLQT VGCLVQESGS FKVQALHFHG AGGSKLRPRR 180 GLLAERKQLY HLGFADKEEL Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-17	20	69	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-17	20	69	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-17	20	69	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-17	20	69	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-17	20	69	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-17	20	69	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-17	20	69	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-17	20	69	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-17	20	69	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-17	20	69	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-17	20	69	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-17	20	69	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL662954	1e-56	AL662954.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02, complete sequence.
GenBank	AP014960	1e-56	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006652650.1	7e-61	PREDICTED: uncharacterized protein LOC102700890
TrEMBL	J3M0G9	2e-59	J3M0G9_ORYBR; Uncharacterized protein
STRING	OB04G28940.1	3e-60	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	2e-25	G2-like family protein