PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g07540.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 305aa    MW: 32120.1 Da    PI: 5.1743
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g07540.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35111022102
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+y ++ed++++++isw+++g++fvv+ + efa+++Lpk+Fkhsnf+SFvRQLn+YgFkkv  ++         we
  Zjn_sc00004.1.g07540.1.sm.mkhc  11 FLTKTYAMVEDPSTDDTISWNDTGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADR---------WE 80 
                                     9****************************************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkks 102
                                     F+++ F++g+k+ll  i+r+k 
  Zjn_sc00004.1.g07540.1.sm.mkhc  81 FANDCFRRGEKHLLGGIQRRKG 102
                                     *******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-387100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-567100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.07E-358100IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-191134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3111100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-194961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1702.6E-4151179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MASPVAGTPP FLTKTYAMVE DPSTDDTISW NDTGTAFVVW RPAEFARDLL PKHFKHSNFS  60
SFVRQLNTYG FKKVVADRWE FANDCFRRGE KHLLGGIQRR KGTGASAGAA AVPGIPTAIP  120
ISSPPTSSGG EPAVSSSPPR GVAAAAGVSG AVAELEEENA RLRRENASLK RELARARSLC  180
DGVRRLVSRY DHGGEGEDDA EGGGDRGGGG GGPGGKPMLF GVAIGSKRSR GDDGDEEDDG  240
VDGVEDDGED EEEDDDERHA ARGREDKKRR NDQSDLDVLA LSVRAAAAAA RPGAAGSRSR  300
KSSVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-27110011120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444830.0AY344483.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976526.11e-132heat stress transcription factor B-2a-like
SwissprotQ7XRX31e-123HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBLA0A368RZJ31e-131A0A368RZJ3_SETIT; Uncharacterized protein
STRINGSb06g025710.11e-131(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-50HSF family protein
Publications ? help Back to Top
  1. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]