PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00004.1.g08130.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 532aa MW: 57407.1 Da PI: 9.7713

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00004.1.g08130.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	93.9	1.1e-29	228	322	1	89
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+kv tpsdv+k++rlv+pk++ae++ +e++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++g Zjn_sc00004.1.g08130.1.am.mk 228 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAG 308 89*************************955556888*************************************** PP -EEEEEE-.SS.SE CS B3 78 DfvvFkld.gr.se 89 D+v F + g+ + Zjn_sc00004.1.g08130.1.am.mk 309 DTVSFGRGaGEaAR 322 ***955344444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.6E-40	218	332	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.27E-28	225	316	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.99E-25	226	313	No hit	No description
PROSITE profile	PS50863	13.846	228	333	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-26	228	331	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-20	228	333	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MSGQEERNKA KPGIRITERS PECACCCAET FPAPHRRRLL YAIGSAWPVA FQESSRAVPP 60 SASPRVGAQA AFPQLARSLY PSKQMNPPLA DPRIQQASEQ PSQSQPAARS LTASHRTDAA 120 AEAHDPPKER RGKGSRRRPK AAPRREDEEE GQEREEEGDD EASPREIPFM TAAASSSAPS 180 ASASAASASG SALRSSDGAG ASGRGGGGGD GGGNDDDDVE VIEKEHMFDK VVTPSDVGKL 240 NRLVIPKQHA EKYFPLDAAA NEKGLLLSFE DRAGKLWRFR YSYWNSSQSY VMTKGWSRFV 300 KEKRLDAGDT VSFGRGAGEA ARDRLFIDWK RRADVVRDPH WMPRIPLPVP SAASPYGPWG 360 GGAGGFFMPT SPPATLYEHH RLRQSLDFRD VNAAAPARQL LFFGSAGMPP PGTMLPPPPP 420 PPPMHITVQP SPTVTAGLPM VLDSVSLVNS PTAASKRVRL FGVNLDNPHP GRGESSHDAN 480 ALSRRMPGWQ RPSPLRLFEL PHHQRNVAGE ARVESSAASS PSSSSSSKRE AH

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MSGQEERNKA KPGIRITERS PECACCCAET FPAPHRRRLL YAIGSAWPVA FQESSRAVPP  60
SASPRVGAQA AFPQLARSLY PSKQMNPPLA DPRIQQASEQ PSQSQPAARS LTASHRTDAA  120
AEAHDPPKER RGKGSRRRPK AAPRREDEEE GQEREEEGDD EASPREIPFM TAAASSSAPS  180
ASASAASASG SALRSSDGAG ASGRGGGGGD GGGNDDDDVE VIEKEHMFDK VVTPSDVGKL  240
NRLVIPKQHA EKYFPLDAAA NEKGLLLSFE DRAGKLWRFR YSYWNSSQSY VMTKGWSRFV  300
KEKRLDAGDT VSFGRGAGEA ARDRLFIDWK RRADVVRDPH WMPRIPLPVP SAASPYGPWG  360
GGAGGFFMPT SPPATLYEHH RLRQSLDFRD VNAAAPARQL LFFGSAGMPP PGTMLPPPPP  420
PPPMHITVQP SPTVTAGLPM VLDSVSLVNS PTAASKRVRL FGVNLDNPHP GRGESSHDAN  480
ALSRRMPGWQ RPSPLRLFEL PHHQRNVAGE ARVESSAASS PSSSSSSKRE AH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	4e-60	223	332	3	113	B3 domain-containing transcription factor NGA1
5os9_B	4e-60	223	332	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727694	0.0	KJ727694.1 Zea mays clone pUT5633 ABI3VP1 transcription factor (ABI12) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976592.1	1e-156	B3 domain-containing protein Os02g0683500
Swissprot	Q6EU30	1e-121	Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBL	A0A1E5V6G8	1e-162	A0A1E5V6G8_9POAL; B3 domain-containing protein
STRING	Si011823m	1e-156	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	7e-64	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]