PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g09180.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 232aa    MW: 27655.1 Da    PI: 9.5262
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g09180.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.54.1e-191579164
                        trihelix  1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykki 64
                                    +W +qe+++Li+ar ++e++  + ++++k+ We+v++ +rerg++r++ qCk+kw+nl +ryk+ 
  Zjn_sc00004.1.g09180.1.sm.mkhc 15 QWGEQETRELIAARGKIEREAVTaRRSAKTMWEAVAAWLRERGYRRTADQCKCKWKNLVNRYKRQ 79
                                    7*****************9887626799***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-151479No hitNo description
CDDcd122031.07E-151478No hitNo description
PROSITE profilePS500907.3171673IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEVGGVGGRD ERVPQWGEQE TRELIAARGK IEREAVTARR SAKTMWEAVA AWLRERGYRR  60
TADQCKCKWK NLVNRYKRQL LESETGATVK KKLKRPSGNQ TSEESDDEED CGEESEGDKP  120
MHDRKRRADD KKQQPRRISE KSRVGTSSIH DLLQDFLVQQ QRIDMQWREM TEKRAQERLL  180
FEQEWRQTMQ KLEQERLMLE RSWMEREEQR RMREEARAEK RDALLTTLGA FN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848521e-63KF184852.1 Saccharum hybrid cultivar R570 clone BAC 020L15 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448463.11e-104trihelix transcription factor GT-3b
TrEMBLA0A059Q3B01e-110A0A059Q3B0_9POAL; Transcription factor
STRINGPavir.J40572.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.16e-17Trihelix family protein