PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g11820.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 321aa    MW: 34401 Da    PI: 7.3607
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g11820.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.16e-1571121155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  Zjn_sc00004.1.g11820.1.am.mkhc  71 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 121
                                     89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.466136IPR001471AP2/ERF domain
SMARTSM003805.4E-4242IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-6637IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-8736IPR001471AP2/ERF domain
PfamPF008476.1E-1171121IPR001471AP2/ERF domain
CDDcd000188.09E-2771131No hitNo description
SuperFamilySSF541712.09E-1871131IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-1772129IPR001471AP2/ERF domain
SMARTSM003805.0E-3372135IPR001471AP2/ERF domain
PROSITE profilePS5103216.39772129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDMACAGGFD TAHAAARAYD RAAIKFRGVE ADINFSLEDY QDDMKQIGNL SKEEFVHVLR  60
RQSTGFPRGS SKYRGVTLHK CGRWEARMGQ FLGKKYVYLG LFDTEEEAAR AYDRAAIKCN  120
GKDAATNFDP SMYAEELEPS SAATGGDEHN LNLSLGSSAG SKRGSLDGGG DEESSDHRVL  180
MAFDLDWQTA AARSTKAKQF DQSSKQAQMP PALQASQHLS FNPRHHHQFL SGGDPGTSGG  240
LSLMIGGAGG GGGHCPPPLQ QPQRLPRGWG NTTTWPPYPP SPSTGAAATA TAAAASSRFP  300
PYVTTQQAPS WTGFHSLTRP T
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824499.11e-147AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AVJ91e-137APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A2T7D0V31e-146A0A2T7D0V3_9POAL; Uncharacterized protein
TrEMBLA0A2T8IE451e-146A0A2T8IE45_9POAL; Uncharacterized protein
STRINGPavir.J06508.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-64AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]