PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g12950.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 183aa    MW: 19252.9 Da    PI: 10.23
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g12950.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-191060155
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  ++y+GVr ++ +gr++AeIrdp +   r+r++lg+f++ae Aa+a++ a+++l+g
  Zjn_sc00004.1.g12950.1.sm.mk 10 PRYRGVRKRP-WGRFAAEIRDPAK---RARVWLGTFDSAEAAARAYDVAARNLRG 60
                                  68********.**********843...6*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.1E-141060IPR001471AP2/ERF domain
CDDcd000183.11E-201070No hitNo description
SuperFamilySSF541714.12E-221169IPR016177DNA-binding domain
SMARTSM003801.1E-351174IPR001471AP2/ERF domain
PROSITE profilePS5103224.0651168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-311168IPR001471AP2/ERF domain
PRINTSPR003671.6E-101223IPR001471AP2/ERF domain
PRINTSPR003671.6E-103450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MCDTAAVAAP RYRGVRKRPW GRFAAEIRDP AKRARVWLGT FDSAEAAARA YDVAARNLRG  60
PLARTNFPVV PRLPLTSSRP RGLVVAPAQA AAPTCSSSST VESSSGPRVG PKTAAAPRKR  120
VVVLLPRPAA PDAGCHSDCA SSTSVMDDGD DASTVRTRVP FDLNLAPSMD GDLDAGTDLR  180
LCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-201269664ATERF1
3gcc_A2e-201269664ATERF1
5wx9_A2e-2011681472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00366DAPTransfer from AT3G20310Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9580144e-84EU958014.1 Zea mays clone 1640422 ethylene-responsive transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822790.16e-51ethylene-responsive transcription factor 7-like
TrEMBLA0A0A9E7G96e-67A0A0A9E7G9_ARUDO; Uncharacterized protein
STRINGPavir.Ga00187.1.p3e-56(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.16e-25ethylene response factor 7