PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g01110.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26960.1 Da    PI: 9.8828
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g01110.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.85.1e-121150342
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                  i nks r   + kR++g+ K A+ L +LC+++++v+++++
  Zjn_sc00005.1.g01110.1.am.mk 11 IANKSIRRAEYKKRQEGLVKMANDLTTLCGIKACVVVYGE 50
                                  89************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.358150IPR002100Transcription factor, MADS-box
SMARTSM004329.7E-7160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-14161IPR002100Transcription factor, MADS-box
CDDcd002668.73E-19278No hitNo description
PfamPF003191.0E-111152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAPKKVNLQW IANKSIRRAE YKKRQEGLVK MANDLTTLCG IKACVVVYGE GKPQPEVRKF  60
DHENCERETL FLLHKTMTGH HTSLVDLTNQ DLIGIKCMVE AKTKKIKECL QQLDIKQGQT  120
LQEPLVHPLL FSSQQQGDPM YTKRHTPHWN KKMSHAHEDF LKKRISKLRH LVRRWYHENQ  180
DRETLILFHE SMVSDHPGLV GMTRTSSRTG LSTATNTSGS VGCDVLQHYN QGGLP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317822.18e-31agamous-like MADS-box protein AGL80
TrEMBLA0A1B6PT902e-29A0A1B6PT90_SORBI; Uncharacterized protein
STRINGSb05g023895.15e-30(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4257633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.25e-15M-type_MADS family protein