PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g02290.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 203aa    MW: 22479.5 Da    PI: 9.3706
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g02290.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-18107154148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +grWT+eEde+l++++k++G g+W++ ++  g+ R++k+c++rw +yl
  Zjn_sc00005.1.g02290.1.sm.mk 107 KGRWTKEEDEILARYIKEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 154
                                   79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2398157IPR009057Homeodomain-like
PROSITE profilePS5129422.842102158IPR017930Myb domain
SMARTSM007171.0E-13106156IPR001005SANT/Myb domain
PfamPF002491.1E-16107154IPR001005SANT/Myb domain
SuperFamilySSF466895.01E-22108181IPR009057Homeodomain-like
CDDcd001674.88E-13109154No hitNo description
PROSITE profilePS500903.95155203IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.2E-8158181IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MQPESGDYPF APTHPHRSVP NNATVDFSPP NCAVCIFTQE PDPTSSSSQL SVPLSLCRAQ  60
AHKKPQLFAV GSGDPSSSSL NLSSSPFSLK QRGMGRAPCC EKVGLKKGRW TKEEDEILAR  120
YIKEHGEGSW RSLPKNAGLL RCGKSCRLRW INYLRADLKR GNISEEEDEM IMKLHATLGN  180
RESNTSFAFS MKTSGKTQTL VHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-13105181580B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5218809e-98AF521880.1 Zea mays R2R3 Myb transcription factor MYB-IF35 mRNA, complete cds.
GenBankBT0399019e-98BT039901.1 Zea mays full-length cDNA clone ZM_BFc0050D21 mRNA, complete cds.
GenBankBT0633089e-98BT063308.1 Zea mays full-length cDNA clone ZM_BFc0051B20 mRNA, complete cds.
GenBankBT0882009e-98BT088200.1 Zea mays full-length cDNA clone ZM_BFc0061H17 mRNA, complete cds.
GenBankHQ8587219e-98HQ858721.1 Zea mays clone UT1188 MYB-IF35 transcription factor mRNA, partial cds.
GenBankHQ8587689e-98HQ858768.1 Zea mays clone UT1749 MYB transcription factor mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.17e-49myb domain protein 12