PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g03520.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 301aa    MW: 32127.2 Da    PI: 10.459
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g03520.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.4e-15121165347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     +WT++E+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  Zjn_sc00005.1.g03520.1.sm.mkhc 121 PWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 165
                                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.68318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.171114170IPR017930Myb domain
SuperFamilySSF466893.07E-18115171IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-19117169IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.2E-11118164IPR009057Homeodomain-like
SMARTSM007171.5E-11118168IPR001005SANT/Myb domain
CDDcd001675.83E-10121166No hitNo description
PfamPF002492.4E-12121165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MARKCSSCGN NGHNSRTCSG GGHRSMDSTG VYGSDGVRLF GVQLHAGASP MPMKKCFSME  60
CLSSSAPAYY AAALAGAASS SPSASSSSSL VSVDETAGRM TNGYLSDGLM GRAQERKKGV  120
PWTEDEHRRF LAGLEKLGKG DWRGISRHFV TTRTPTQVAS HAQKYFLRQS SLTQKKRRSS  180
LFDVIENDER ATSLNARLKL RNETSSMSET EFPALSLGIG IRGSTAKPPE HVLAPRCSAA  240
MSSSSSASPN VTAPRHPSLL MTSKPPPVSL QAPDLELKIS TARQTDGPSP RTPFFGTIRV  300
T
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625837.11e-112transcription factor MYBS3-like
TrEMBLA0A0A9JSI11e-138A0A0A9JSI1_ARUDO; Uncharacterized protein
STRINGORUFI01G06450.11e-116(Oryza rufipogon)
STRINGORGLA01G0055800.11e-116(Oryza glaberrima)
STRINGOBART01G05900.11e-116(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.13e-48MYB_related family protein