PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g03930.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 216aa    MW: 23012.9 Da    PI: 8.8349
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g03930.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.85.3e-29108166159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+ +dp++v++tY g H h 
  Zjn_sc00005.1.g03930.1.am.mk 108 LDDGFRWRKYGKKAVKSSPNPRNYYRCSVEGCGVKKRVERDCDDPRYVVTTYDGVHSHA 166
                                   59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-2996166IPR003657WRKY domain
SuperFamilySSF1182903.27E-26100166IPR003657WRKY domain
PROSITE profilePS5081129.436103168IPR003657WRKY domain
SMARTSM007744.1E-32108167IPR003657WRKY domain
PfamPF031067.9E-23109165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAASLGLCFP PDDLVVANNC AAAMHFLPSA IAVAADDFCP KLGVHPPPDY YYSPPQQVFA  60
GNEMNMRFAD DGRMTTTMRM SRAAGTGTGS RPSPSRIGFR TRSKVDVLDD GFRWRKYGKK  120
AVKSSPNPRN YYRCSVEGCG VKKRVERDCD DPRYVVTTYD GVHSHAAGRR QALAPYGAAA  180
TSACAPAGLA AGAPPSDVWG GVQVHAAAAL SSESSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-2698165774Probable WRKY transcription factor 4
2lex_A6e-2698165774Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586136e-93KU058613.1 UNVERIFIED: Panicum miliaceum WRKY28-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818051.11e-55WRKY transcription factor WRKY24-like
TrEMBLA0A2S3HYH63e-54A0A2S3HYH6_9POAL; Uncharacterized protein
STRINGPavir.Ea00274.1.p2e-55(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-37WRKY DNA-binding protein 51