PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00005.1.g04100.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YC

Protein Properties

Length: 215aa MW: 22579.9 Da PI: 4.3846

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00005.1.g04100.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	48.3	2.2e-15	95	176	20	100
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdivprd 99 lPl r+k+i+++d d+k++++ea +l+s a elf+ l+ + a rr+++ + + aav + dfl+d p d Zjn_sc00005.1.g04100.1.sm.mk 95 VLPLGRVKRIIRVDRDIKKVTSEAAMLISAATELFLGSLAAGAHTAAAALGRRAVRAAHVRAAVRAhRPTADFLLDCLPVD 175 69***********************************************************97515699*****998 PP NF-YC 100 e 100 e Zjn_sc00005.1.g04100.1.sm.mk 176 E 176 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.68E-15	94	174	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.7E-16	95	159	IPR009072	Histone-fold
Pfam	PF00808	2.2E-12	96	158	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MATAGDPTEE VEHVGEETID AMEPVGEGTT EAMEQVGEET TDAMEQVGEE SGGPTEVSGK 60 KPDAEATEHI GEEPEREEAD AEEEEEAGGA SLRPVLPLGR VKRIIRVDRD IKKVTSEAAM 120 LISAATELFL GSLAAGAHTA AAALGRRAVR AAHVRAAVRA HRPTADFLLD CLPVDEEAPR 180 ARSTAGSGSG RGGDGEAKSL PRGTRRIDAF FQKVT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879187.1	2e-44	tropomyosin
TrEMBL	A0A3B6EFW6	2e-45	A0A3B6EFW6_WHEAT; Uncharacterized protein
TrEMBL	A0A446N6Y2	2e-45	A0A446N6Y2_TRITD; Uncharacterized protein
STRING	Pavir.J29091.1.p	1e-44	(Panicum virgatum)
STRING	Pavir.J40808.1.p	2e-45	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13342	26	28