PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00005.1.g04120.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 253aa MW: 27042.2 Da PI: 10.3446

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00005.1.g04120.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.2	2.9e-32	175	233	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Zjn_sc00005.1.g04120.1.am.mk 175 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 233 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-33	160	233	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-28	167	234	IPR003657	WRKY domain
PROSITE profile	PS50811	29.356	170	235	IPR003657	WRKY domain
SMART	SM00774	9.8E-37	175	234	IPR003657	WRKY domain
Pfam	PF03106	4.1E-25	176	232	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MFPSPGRAAM ALGLGAQQLS STAAAGTSST PTVTFAFQPA PPTSDHSHHH HHHGVLGYGS 60 SHVLDRPTTA TSSSSSHAAA PSSTVPSSNL HHLQAAAAAH VSLPTRSSPP HPWSSDERGK 120 GATLTPGGGG LQHGAAAAAL GVGAVRMKKA GGGKARRKMR EPRFCFKTMS DVDVLDDGYK 180 WRKYGQKVVK NTQHPRSYYR CTQDNCRVKK RVERLAEDPR MVITTYEGRH VHSPSHDDDD 240 AAARANAEMT FLW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-26	166	232	8	74	Probable WRKY transcription factor 4
2lex_A	5e-26	166	232	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108755	1e-121	AK108755.1 Oryza sativa Japonica Group cDNA clone:002-150-F11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001132878.1	1e-99	uncharacterized protein LOC100194371
TrEMBL	B4FIG2	2e-98	B4FIG2_MAIZE; Putative WRKY transcription factor 13
STRING	GRMZM2G151444_P01	4e-99	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1138	38	130

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	4e-47	WRKY DNA-binding protein 13