PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00005.1.g05000.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 189aa MW: 19712.8 Da PI: 8.5976

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00005.1.g05000.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.1	8.2e-45	28	127	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+ssl+yeAear++dPvyG+vg i+ Zjn_sc00005.1.g05000.1.sm.mk 28 PCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVSSLAYEAEARVKDPVYGCVGAIS 108 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 lq+q+++l++el+++++e Zjn_sc00005.1.g05000.1.sm.mk 109 MLQRQVHRLQKELDAAHAE 127 ************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.465	27	128	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-44	28	125	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MASPSSTSNS AMSPVAAPGT TTPGAGAPCA ACKFLRRKCL PGCVFAPYFP PEEPQKFANV 60 HKVFGASNVT KLLNELLPHQ REDAVSSLAY EAEARVKDPV YGCVGAISML QRQVHRLQKE 120 LDAAHAELLR YACGDVGIPT ALPVSATPRL STAMPSPSQL AAATATASMY TGRRLGVIEG 180 VAAAPPPIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-84	21	144	4	128	LOB family transfactor Ramosa2.1
5ly0_B	7e-84	21	144	4	128	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818403.1	1e-117	protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_025818404.1	1e-117	protein LATERAL ORGAN BOUNDARIES-like
Swissprot	Q9FML4	2e-67	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A1E5VHF8	1e-117	A0A1E5VHF8_9POAL; Protein LATERAL ORGAN BOUNDARIES
STRING	Pavir.J38993.1.p	1e-116	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8813	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	3e-64	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]