PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g05330.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 404aa    MW: 43620.2 Da    PI: 10.6304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g05330.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11237281554
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   h+e+ErrRR+riN  +++Lr+++P       k ++Ka+ L k+v+ +k L
  Zjn_sc00005.1.g05330.1.am.mk 237 HSEAERRRRERINAHLATLRRMIPDT-----KQMDKATLLAKVVDQVKAL 281
                                   9************************9.....67***********988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-13236290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-9237281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-13237288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00215245286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAKVPARAAV VLLVALALLL AGPQEADAQG GYGYSTQAQE AGAQGQGGYG YSTQASSDSD  60
NRYNGISCKA LGNCDKNYAG RPMGQANKYS RGKPPCTRRD SRARRPRTRA CISQPSVSFC  120
ARTLSISPWC VIDLHVHKSW TPPDALAPGA QILPATSKKC LPDSQWEHMR RKKAGYSYNA  180
ARQHAYLMEM LRGPVLLRRQ TSLAPPVVTV GPPEMSSSSG SGSGKRATEA RRALKIHSEA  240
ERRRRERINA HLATLRRMIP DTKQMDKATL LAKVVDQVKA LKRKAREAAR SVPLPPEFDE  300
VSIECYTSDA AAGIVGTDKV VYIKASVSCG NRPDLIPGII QALRRLRLRA LRADMTSLGG  360
RVQLVFTLCK EDGSGAGASL GSLKEAVRQA LAKAASPEMR PGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240245ERRRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8315686e-51CT831568.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN107N12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623162.15e-77putative transcription factor bHLH107
TrEMBLA0A0D9Y3K35e-81A0A0D9Y3K3_9ORYZ; Uncharacterized protein
STRINGOGLUM01G04250.19e-82(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-17bHLH family protein