PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g07160.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 314aa    MW: 34450.2 Da    PI: 10.7419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g07160.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-15171213347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    ++ eE+ellv+++++lG++ W +Ia +++ gRt+k++ s+w++ 
  Zjn_sc00005.1.g07160.1.am.mk 171 CFSDEEEELLVKLHALLGNR-WLLIAGRLP-GRTGKEVESHWNST 213
                                   699*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.619160218IPR017930Myb domain
SMARTSM007179.8E-13168216IPR001005SANT/Myb domain
SuperFamilySSF466892.89E-11170218IPR009057Homeodomain-like
PfamPF002493.2E-13171212IPR001005SANT/Myb domain
CDDcd001671.19E-10172211No hitNo description
Gene3DG3DSA:1.10.10.602.4E-16172215IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MVFPAEPSAG RLLRTRATNN SGSDRPANGS PRACLRSPRA ASTHLTLLRS LRLGPADDRP  60
AGPPRAHRLS TGNRRQRARR YKFIPCRTGR MPGYVAVASS SSLIALFAAR CRSKPAMRKK  120
LHPLQRGVDV RPGRRQQRRL AAGHWAPTPS SPGPASTQPT ARLVRSGGSK CFSDEEEELL  180
VKLHALLGNR WLLIAGRLPG RTGKEVESHW NSTMRRKLEC VAVVHHDSHR SMTRLAPADG  240
EQQRRDPCDQ LHLGEVECKA KHPNCCLSSN DDDSVSDAGS YCGARQELAC GVNLELTLAT  300
PCFYVGENEK VADH
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2780155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-16myb domain protein 3