PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g08060.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 206aa    MW: 21994.1 Da    PI: 9.7677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g08060.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-082490555
                                    HHHHHHHHHHHHHHHHHHHHCTSCC.C.................TTS-.STCHHHHHHHHHHHHHHH CS
                             HLH  5 hnerErrRRdriNsafeeLrellPk.as..............kapskK.lsKaeiLekAveYIksLq 55
                                     + +E++RR +++    +L +l+P+ a               ++psk  ++  + Le A  YIk+L+
  Zjn_sc00005.1.g08060.1.sm.mkhc 24 RKDVEKNRRLHMKGLCLKLSSLIPPsAAakhasllaaapasgSNPSKDtVTQLDHLENAAAYIKQLK 90
                                    5789*********************555**************7777777****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.0771989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-102198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-822100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-52489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MKSRRQSSGE GATHSGGGGC KMERKDVEKN RRLHMKGLCL KLSSLIPPSA AAKHASLLAA  60
APASGSNPSK DTVTQLDHLE NAAAYIKQLK GRIEELKRRK GGGGGGSFHG QGPRAAVDTG  120
VRMPVIEVRY QDGTLEVVLV SEAGRPFKLH EVITVLEQEG AEVVSASFSG VGDKIFYTIH  180
SQAISSRIGL EPSRVSERLE DLLILD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0942132e-74FP094213.1 Phyllostachys edulis cDNA clone: bphylf003c24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967963.13e-97transcription factor bHLH168
TrEMBLK3XLS46e-96K3XLS4_SETIT; Uncharacterized protein
STRINGSi002847m1e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.13e-18bHLH family protein