PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00005.1.g08080.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 349aa MW: 37441.5 Da PI: 10.9499

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00005.1.g08080.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.3e-09	78	126	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54 +e+ErrRR++++s ++L +l+Pk +s K ++ L +A YIk+L Zjn_sc00005.1.g08080.1.am.mk 78 KEIERRRRQHMKSLCSKLVSLIPKeH---YSSKntMTQLGSLDEAAAYIKKL 126 79********************55...45444799***********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-10	64	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.664	72	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.22E-6	77	127	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-12	77	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.8E-7	78	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-7	78	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MPCRAAAKHE VARSTISTSL LCQLAENELK RGRLSGREME KTAKKSGSGD TAAAAGKRSS 60 TSNNNSGSSG TTAAVDRKEI ERRRRQHMKS LCSKLVSLIP KEHYSSKNTM TQLGSLDEAA 120 AYIKKLKGRV DDLQQKRSSA QLLASMRGGG VGASTSVAAE DESVAPVVEV RQHDDGLGLD 180 VVLISIVERP FKMHDVVTVL EEEGAEIINA NFSVAGRKNF YTIHCRTSSL LFLSIADNSS 240 LLPPNLRQCF WPTRRRGRRS PAVLSRALHR QGVRSRWILA LKARVELAGV LTAGVDLHVS 300 APSQSVSRSG NRAASTHGPG GRSARAARGE LGGAAGSRPG TCWTRGYCT

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MPCRAAAKHE VARSTISTSL LCQLAENELK RGRLSGREME KTAKKSGSGD TAAAAGKRSS  60
TSNNNSGSSG TTAAVDRKEI ERRRRQHMKS LCSKLVSLIP KEHYSSKNTM TQLGSLDEAA  120
AYIKKLKGRV DDLQQKRSSA QLLASMRGGG VGASTSVAAE DESVAPVVEV RQHDDGLGLD  180
VVLISIVERP FKMHDVVTVL EEEGAEIINA NFSVAGRKNF YTIHCRTSSL LFLSIADNSS  240
LLPPNLRQCF WPTRRRGRRS PAVLSRALHR QGVRSRWILA LKARVELAGV LTAGVDLHVS  300
APSQSVSRSG NRAASTHGPG GRSARAARGE LGGAAGSRPG TCWTRGYCT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967960.1	6e-74	transcription factor bHLH162
Refseq	XP_012701590.1	6e-74	transcription factor bHLH162
TrEMBL	K3XLP8	1e-72	K3XLP8_SETIT; Uncharacterized protein
STRING	Pavir.Ea00786.1.p	9e-74	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	7e-20	bHLH family protein