PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00005.1.g09330.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 179aa MW: 19894.3 Da PI: 10.8981

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00005.1.g09330.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	56.1	1.3e-17	34	102	53	123
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvm 123 ++++w+fF +rd+ky+tg r+nr+t++gyWk+tgkd++++ ++++ g+kktL + r +++ +W + Zjn_sc00005.1.g09330.1.sm.mkhc 34 IKDNKWHFFGSRDRKYPTGARSNRTTRAGYWKSTGKDRAIKL-NRRTLGTKKTLDAFvLCRV--TRRDEWAL 102 4789************************************.9999*****65512232..34666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	18.642	1	141	IPR003441	NAC domain
Pfam	PF02365	4.2E-6	27	101	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-16	34	94	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MRARIVDPVR CRGEGWERPR PRGARRSAKC NLPIKDNKWH FFGSRDRKYP TGARSNRTTR 60 AGYWKSTGKD RAIKLNRRTL GTKKTLDAFV LCRVTRRDEW ALENDSGVGN RNPHPQNSND 120 TAAFVPAEKQ EDHATSVVIA KTQEAAGASV VIAKKQEDAA TSGNCAGEAN HAVTVNCKH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt and cold stresses. {ECO:0000269\|PubMed:18813954}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818496.1	2e-49	NAC domain-containing protein 74-like
Swissprot	Q7GCL7	4e-33	NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBL	A0A1E5W8C0	2e-52	A0A1E5W8C0_9POAL; NAC domain-containing protein 74
STRING	Pavir.Ea01166.1.p	2e-48	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7560	38	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	8e-21	NAC domain containing protein 57

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]