PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00006.1.g05510.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 390aa    MW: 41378.3 Da    PI: 6.1409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00006.1.g05510.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.8e-10182226655
                                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      Er+RR r+++++ eLr l+P+      +K++Ka+i   Av Y+k+Lq
  Zjn_sc00006.1.g05510.1.am.mk 182 IVSERKRRVRMKERLYELRALVPNI-----TKMDKASIIADAVVYVKNLQ 226
                                   568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-15173242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.17E-13173226No hitNo description
PROSITE profilePS5088815.269176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15178241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7182226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-11182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEREEIRSTP TQAGQVTPPS AGVRAAGQTR RGSLPRAAVL VRARPPPPPP NSSAMEHDLL  60
QLLHLPAQDH LLLSSGFFGV ATGGGGAAVH TPCGDAAGLD DCGWMEDLMH LGDELFAGDD  120
DSAAGPGVDH QLLSMCGSGS PEGPPAPSVS LELDGAEGSP PSVEQDDASA ATRKRRDRSK  180
TIVSERKRRV RMKERLYELR ALVPNITKMD KASIIADAVV YVKNLQSRAT KLKEEVATLE  240
ATPRPAAARH QQQQQHPKQH AAAGRRQQSG RLPAPDGDDN DDGSAGPAGA RVMNVDVTQV  300
GDGRFYVTVE CERRDGVAAP LYSAVESLAC FRVESSSFGR SGHDRVVSTH ILKGNDQMGN  360
ATVGEGTVNL WMTAALLKEG FQPEATVEIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173188KRRDRSKTIVSERKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825747.11e-113transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A3L6PRK61e-113A0A3L6PRK6_PANMI; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
STRINGPavir.J29678.1.p1e-116(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.12e-43FER-like regulator of iron uptake