PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g00390.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 253aa    MW: 26373.1 Da    PI: 7.8262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g00390.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000716890123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C  C+k+F++   L  H  +H
  Zjn_sc00007.1.g00390.1.sm.mk 68 YECRTCNKCFPTFQALGGHRASH 90
                                  99**********99999998887 PP
2zf-C2H212.30.00053157179123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++Cg  F +   L  H+r+H
  Zjn_sc00007.1.g00390.1.sm.mk 157 HECSICGAEFASGQALGGHMRRH 179
                                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.01E-86790No hitNo description
PfamPF139121.4E-106792IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0146895IPR007087Zinc finger, C2H2
SMARTSM003550.166890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-8152179No hitNo description
PfamPF139121.0E-12156180IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64157184IPR007087Zinc finger, C2H2
SMARTSM003550.016157179IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAHCLILLAQ GGAGAVVDSK PASAPQPQPP VVPHQAPPPA VKSERYTSRK YTEAATTADG  60
VKAGFYVYEC RTCNKCFPTF QALGGHRASH KKPRLPAGDQ EEISNKPSPA TMTTASPPPI  120
PPPRIDLVAV FPDVTTALSL NSHVTAGSGG GEKLRVHECS ICGAEFASGQ ALGGHMRRHR  180
PLNAPVTAIT TMDTKKEGSG ASINLELDLN LPAPSDVEEA VSLPPVALGL GQFNDGKKAG  240
LMLTASALVD CHY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039898e-68AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040268e-68AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149588e-68AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126108e-68CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822199.11e-104zinc finger protein ZAT5-like
TrEMBLA0A0A9HRL31e-104A0A0A9HRL3_ARUDO; Uncharacterized protein
STRINGSb04g037850.16e-97(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-41C2H2 family protein