PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g03820.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 255aa    MW: 27301.7 Da    PI: 6.2827
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g03820.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-20114164155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GVr+++ +g+W+AeIrdp     +  +r +lg+f+taeeAa+a++ a+ +++g
  Zjn_sc00007.1.g03820.1.sm.mk 114 SRYRGVRRRP-WGKWAAEIRDP-----HraARKWLGTFDTAEEAARAYDVAAVEFRG 164
                                   79********.**********7.....338***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-23114173IPR016177DNA-binding domain
PfamPF008472.5E-13114164IPR001471AP2/ERF domain
PROSITE profilePS5103225.818115172IPR001471AP2/ERF domain
SMARTSM003802.5E-35115178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-31115173IPR001471AP2/ERF domain
PRINTSPR003671.6E-11116127IPR001471AP2/ERF domain
CDDcd000181.65E-27119174No hitNo description
PRINTSPR003671.6E-11138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAPRLERGGF MLPNTEQANS LLLRALISVV SGDAAVPTLD ELAETKPQVA AAPPAACARC  60
GVDGCPGCEL SAGDATATTG SRSDSEDGES MSMSRVVVAG GVGKQGRRRG ARGSRYRGVR  120
RRPWGKWAAE IRDPHRAARK WLGTFDTAEE AARAYDVAAV EFRGQRAKLN FPADAAAVSA  180
YSSWATIQVP QQPVPQSLHE YCGLTAASPV HMAQAPAAQL WQQQGGRPAA KDREEIWDGL  240
DEILMLEDDS FWSIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-22106174574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9730581e-72EU973058.1 Zea mays clone 392659 ethylene-responsive element binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806850.11e-89ethylene-responsive transcription factor ERF109-like
TrEMBLA0A2T7FCK73e-90A0A2T7FCK7_9POAL; Uncharacterized protein
STRINGSi018144m2e-83(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-17ethylene response factor 110